Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02105 and BWI76_RS02110 are separated by 36 nucleotides BWI76_RS02110 and BWI76_RS02115 are separated by 203 nucleotides
BWI76_RS02105: BWI76_RS02105 - glutamate/aspartate:proton symporter GltP, at 434,204 to 435,517
_RS02105
BWI76_RS02110: BWI76_RS02110 - hypothetical protein, at 435,554 to 436,237
_RS02110
BWI76_RS02115: BWI76_RS02115 - formate dehydrogenase subunit alpha, at 436,441 to 438,588
_RS02115
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2 at 434.600 kb on + strand, within BWI76_RS02105 at 434.608 kb on - strand, within BWI76_RS02105 at 434.848 kb on + strand, within BWI76_RS02105 at 434.848 kb on + strand, within BWI76_RS02105 at 434.948 kb on + strand, within BWI76_RS02105 at 435.076 kb on + strand, within BWI76_RS02105 at 435.168 kb on - strand, within BWI76_RS02105 at 435.193 kb on + strand, within BWI76_RS02105 at 435.193 kb on + strand, within BWI76_RS02105 at 435.201 kb on - strand, within BWI76_RS02105 at 435.397 kb on - strand at 435.480 kb on + strand at 435.553 kb on - strand at 435.572 kb on + strand at 435.612 kb on - strand at 435.786 kb on + strand, within BWI76_RS02110 at 435.814 kb on - strand, within BWI76_RS02110 at 435.864 kb on - strand, within BWI76_RS02110 at 435.879 kb on + strand, within BWI76_RS02110 at 436.084 kb on - strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.122 kb on + strand, within BWI76_RS02110 at 436.130 kb on - strand, within BWI76_RS02110 at 436.130 kb on - strand, within BWI76_RS02110 at 436.130 kb on - strand, within BWI76_RS02110 at 436.267 kb on - strand at 436.269 kb on + strand at 436.269 kb on + strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.277 kb on - strand at 436.278 kb on - strand at 436.287 kb on - strand at 436.288 kb on - strand at 436.421 kb on + strand at 436.442 kb on - strand at 436.493 kb on + strand at 436.501 kb on + strand at 436.633 kb on - strand at 436.661 kb on + strand, within BWI76_RS02115 at 436.661 kb on + strand, within BWI76_RS02115 at 436.679 kb on - strand, within BWI76_RS02115 at 436.904 kb on - strand, within BWI76_RS02115 at 436.962 kb on + strand, within BWI76_RS02115 at 436.962 kb on + strand, within BWI76_RS02115 at 436.970 kb on - strand, within BWI76_RS02115 at 437.012 kb on + strand, within BWI76_RS02115
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 434,600 + BWI76_RS02105 0.30 +0.7 434,608 - BWI76_RS02105 0.31 +0.0 434,848 + BWI76_RS02105 0.49 +0.6 434,848 + BWI76_RS02105 0.49 -1.1 434,948 + BWI76_RS02105 0.57 -0.0 435,076 + BWI76_RS02105 0.66 +0.0 435,168 - BWI76_RS02105 0.73 +0.7 435,193 + BWI76_RS02105 0.75 +0.3 435,193 + BWI76_RS02105 0.75 -0.2 435,201 - BWI76_RS02105 0.76 +0.7 435,397 - +0.3 435,480 + +1.1 435,553 - +1.0 435,572 + -1.3 435,612 - -0.6 435,786 + BWI76_RS02110 0.34 +0.8 435,814 - BWI76_RS02110 0.38 +0.2 435,864 - BWI76_RS02110 0.45 -0.3 435,879 + BWI76_RS02110 0.48 +1.5 436,084 - BWI76_RS02110 0.77 +0.1 436,122 + BWI76_RS02110 0.83 +0.7 436,122 + BWI76_RS02110 0.83 +0.2 436,122 + BWI76_RS02110 0.83 +0.4 436,122 + BWI76_RS02110 0.83 +0.7 436,122 + BWI76_RS02110 0.83 +0.0 436,122 + BWI76_RS02110 0.83 -0.2 436,130 - BWI76_RS02110 0.84 +0.6 436,130 - BWI76_RS02110 0.84 +0.9 436,130 - BWI76_RS02110 0.84 -0.4 436,267 - -0.1 436,269 + +0.7 436,269 + -2.1 436,277 - -1.3 436,277 - +0.2 436,277 - -0.7 436,277 - -0.5 436,277 - -0.4 436,277 - -0.4 436,277 - -2.3 436,278 - -1.6 436,287 - -0.1 436,288 - +0.1 436,421 + -0.0 436,442 - +0.5 436,493 + -0.9 436,501 + +0.7 436,633 - +1.0 436,661 + BWI76_RS02115 0.10 +0.4 436,661 + BWI76_RS02115 0.10 -1.1 436,679 - BWI76_RS02115 0.11 -0.1 436,904 - BWI76_RS02115 0.22 +1.9 436,962 + BWI76_RS02115 0.24 -0.1 436,962 + BWI76_RS02115 0.24 +0.1 436,970 - BWI76_RS02115 0.25 -0.2 437,012 + BWI76_RS02115 0.27 -0.0
Or see this region's nucleotide sequence