Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28365

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
6,181,943	+				-0.1
6,181,943	+				-0.5
6,182,036	+				+0.0
6,182,036	+				-1.1
6,182,036	+				-0.1
6,182,037	-				+0.9
6,182,037	-				+0.7
6,182,037	-				-1.1
6,182,037	-				-1.3
6,182,037	-				+0.7
6,182,227	+				+0.5
6,182,227	+				+0.8
6,182,227	+				-0.1
6,182,228	-				+0.7
6,182,228	-				-1.3
6,182,228	-				-1.5
6,182,228	-				-0.7
6,182,277	+				-0.3
6,182,277	+				+1.0
6,182,277	+				-0.9
6,182,277	+				+1.1
6,182,278	-				-0.3
6,182,278	-				+0.1
6,182,278	-				+0.4
6,182,278	-				-0.3
6,182,299	+				-0.7
6,182,300	-				-0.9
6,182,300	-				+0.4
6,182,375	+				+3.5
6,182,375	+				+0.8
6,182,376	-				-1.1
6,182,425	+				-0.1
6,182,507	+				-0.7
6,182,508	-				+0.7
6,182,508	-				+0.7
6,182,543	+				+0.7
6,182,570	-				+0.5
6,182,613	+				-0.7
6,182,613	+				+0.0
6,182,614	-				-0.3
6,182,618	+				-0.7
6,182,627	+				-1.6
6,182,627	+				+1.9
6,182,627	+				-0.9
6,182,627	+				-0.3
6,182,627	+				+0.3
6,182,628	-				-1.3
6,182,639	+				+0.1
6,182,639	+				+0.8
6,182,639	+				-0.2
6,182,639	+				+1.2
6,182,639	+				-1.2
6,182,639	+				-0.5
6,182,639	+				-0.6
6,182,640	-				+0.7
6,182,640	-				+0.4
6,182,640	-				-0.3
6,182,640	-				-1.9
6,182,640	-				+1.3
6,182,640	-				+0.7
6,182,640	-				+0.4
6,182,640	-				+0.3
6,182,640	-				+0.2
6,182,640	-				+0.2
6,182,772	+				-0.9
6,182,773	-				+1.4
6,182,823	+				-0.2
6,182,823	+				-0.9
6,182,824	-				+0.3
6,182,824	-				+1.1
6,182,824	-				+3.9
6,182,824	-				-1.9
6,182,833	-		AO353_28365	0.10	+0.5
6,182,870	+		AO353_28365	0.13	+0.7
6,182,870	+		AO353_28365	0.13	-0.2
6,182,870	+		AO353_28365	0.13	+0.1
6,182,871	-		AO353_28365	0.13	-0.2
6,182,953	+		AO353_28365	0.19	-0.9
6,182,953	+		AO353_28365	0.19	+1.2
6,182,953	+		AO353_28365	0.19	-3.2
6,182,953	+				-2.5
6,182,953	+		AO353_28365	0.19	-0.9
6,182,953	+		AO353_28365	0.19	-0.1
6,182,953	+		AO353_28365	0.19	+1.3
6,182,953	+		AO353_28365	0.19	-0.1
6,182,954	-		AO353_28365	0.19	-2.3
6,182,954	-		AO353_28365	0.19	-2.3
6,182,954	-		AO353_28365	0.19	-0.9
6,182,954	-		AO353_28365	0.19	+2.3
6,182,954	-		AO353_28365	0.19	+1.7
6,182,954	-		AO353_28365	0.19	+0.8
6,182,954	-		AO353_28365	0.19	+0.3
6,182,954	-		AO353_28365	0.19	+0.5
6,182,967	+		AO353_28365	0.20	-0.5
6,182,968	-		AO353_28365	0.20	+0.7
6,182,968	-		AO353_28365	0.20	-0.1
6,182,968	-		AO353_28365	0.20	-0.8
6,182,968	-		AO353_28365	0.20	-0.7
6,183,038	+		AO353_28365	0.25	+0.7
6,183,038	+		AO353_28365	0.25	+1.8
6,183,039	-		AO353_28365	0.25	+0.4
6,183,039	-		AO353_28365	0.25	+1.1
6,183,093	+		AO353_28365	0.29	+0.3
6,183,093	+		AO353_28365	0.29	-0.3
6,183,093	+		AO353_28365	0.29	-2.1
6,183,093	+		AO353_28365	0.29	-1.9
6,183,094	-		AO353_28365	0.29	-0.5
6,183,094	-		AO353_28365	0.29	+0.6
6,183,094	-		AO353_28365	0.29	-1.0
6,183,094	-		AO353_28365	0.29	-0.3
6,183,103	+		AO353_28365	0.30	+0.3
6,183,104	-		AO353_28365	0.30	-0.9
6,183,238	+		AO353_28365	0.40	+1.3
6,183,238	+		AO353_28365	0.40	-0.3
6,183,238	+		AO353_28365	0.40	+1.4
6,183,238	+		AO353_28365	0.40	+1.0
6,183,238	+		AO353_28365	0.40	-0.8
6,183,238	+		AO353_28365	0.40	-0.7
6,183,238	+				+1.4
6,183,238	+		AO353_28365	0.40	-0.9
6,183,238	+		AO353_28365	0.40	+0.0
6,183,238	+		AO353_28365	0.40	-0.3
6,183,238	+		AO353_28365	0.40	+0.2
6,183,238	+		AO353_28365	0.40	-0.4
6,183,238	+		AO353_28365	0.40	-0.5
6,183,238	+		AO353_28365	0.40	-0.3
6,183,239	-		AO353_28365	0.40	+0.6
6,183,239	-		AO353_28365	0.40	-0.6
6,183,239	-		AO353_28365	0.40	+1.3
6,183,239	-		AO353_28365	0.40	-0.2
6,183,239	-		AO353_28365	0.40	+0.3
6,183,239	-				+0.7
6,183,239	-		AO353_28365	0.40	+0.1
6,183,239	-		AO353_28365	0.40	-2.9
6,183,239	-		AO353_28365	0.40	+1.7
6,183,239	-		AO353_28365	0.40	+1.2
6,183,239	-		AO353_28365	0.40	+0.9
6,183,239	-		AO353_28365	0.40	+0.2
6,183,239	-		AO353_28365	0.40	-1.6
6,183,243	-		AO353_28365	0.40	-1.9
6,183,258	+		AO353_28365	0.41	-1.3
6,183,258	+		AO353_28365	0.41	+0.5
6,183,258	+		AO353_28365	0.41	+1.7
6,183,258	+		AO353_28365	0.41	-1.6
6,183,258	+		AO353_28365	0.41	+1.7
6,183,258	+		AO353_28365	0.41	-1.9
6,183,258	+		AO353_28365	0.41	+0.7
6,183,258	+		AO353_28365	0.41	-0.9
6,183,259	-		AO353_28365	0.41	-0.6
6,183,259	-		AO353_28365	0.41	+0.7
6,183,259	-		AO353_28365	0.41	+0.1
6,183,259	-		AO353_28365	0.41	-0.0
6,183,259	-		AO353_28365	0.41	-0.3
6,183,259	-		AO353_28365	0.41	-0.7
6,183,259	-		AO353_28365	0.41	+1.7
6,183,259	-		AO353_28365	0.41	+0.7
6,183,259	-		AO353_28365	0.41	-1.0
6,183,259	-		AO353_28365	0.41	-0.3
6,183,259	-		AO353_28365	0.41	-0.3
6,183,259	-		AO353_28365	0.41	-0.3
6,183,259	-		AO353_28365	0.41	+1.4
6,183,262	+		AO353_28365	0.41	-0.2
6,183,262	+		AO353_28365	0.41	+1.4
6,183,262	+		AO353_28365	0.41	+0.4
6,183,262	+		AO353_28365	0.41	-1.3
6,183,262	+		AO353_28365	0.41	-1.6
6,183,262	+		AO353_28365	0.41	+0.6
6,183,262	+		AO353_28365	0.41	-0.0
6,183,262	+		AO353_28365	0.41	+0.7
6,183,262	+		AO353_28365	0.41	+0.1
6,183,262	+		AO353_28365	0.41	-0.6
6,183,262	+		AO353_28365	0.41	-0.5
6,183,262	+		AO353_28365	0.41	-1.5
6,183,262	+		AO353_28365	0.41	-1.1
6,183,262	+		AO353_28365	0.41	-0.3
6,183,262	+		AO353_28365	0.41	-0.4
6,183,262	+		AO353_28365	0.41	+1.3
6,183,262	+		AO353_28365	0.41	+0.7
6,183,263	-		AO353_28365	0.41	+0.5
6,183,263	-		AO353_28365	0.41	+1.7
6,183,263	-		AO353_28365	0.41	+0.2
6,183,263	-		AO353_28365	0.41	-0.1
6,183,263	-		AO353_28365	0.41	-0.3
6,183,263	-		AO353_28365	0.41	+1.2
6,183,263	-		AO353_28365	0.41	-0.1
6,183,263	-		AO353_28365	0.41	-2.6
6,183,263	-				-1.9
6,183,263	-		AO353_28365	0.41	-1.9
6,183,263	-		AO353_28365	0.41	-1.6
6,183,263	-		AO353_28365	0.41	+1.2
6,183,263	-		AO353_28365	0.41	+0.3
6,183,272	+		AO353_28365	0.42	-1.6
6,183,272	+		AO353_28365	0.42	-0.5
6,183,273	-		AO353_28365	0.42	-1.3
6,183,320	+		AO353_28365	0.46	+0.2
6,183,320	+		AO353_28365	0.46	+1.1
6,183,321	-		AO353_28365	0.46	+1.1
6,183,420	+		AO353_28365	0.53	+0.1
6,183,420	+		AO353_28365	0.53	+1.1
6,183,420	+		AO353_28365	0.53	-1.3
6,183,421	-		AO353_28365	0.53	+0.1
6,183,598	+		AO353_28365	0.66	+1.2
6,183,598	+		AO353_28365	0.66	-0.9
6,183,598	+		AO353_28365	0.66	+0.1
6,183,598	+		AO353_28365	0.66	-1.8
6,183,598	+		AO353_28365	0.66	+1.0
6,183,598	+		AO353_28365	0.66	+1.4
6,183,598	+		AO353_28365	0.66	+0.7
6,183,599	-		AO353_28365	0.66	-2.0
6,183,599	-		AO353_28365	0.66	+0.1
6,183,599	-		AO353_28365	0.66	+0.4
6,183,599	-		AO353_28365	0.66	-1.9
6,183,599	-		AO353_28365	0.66	-0.1
6,183,599	-		AO353_28365	0.66	-0.3
6,183,599	-		AO353_28365	0.66	+1.1
6,183,599	-		AO353_28365	0.66	-0.3
6,183,599	-		AO353_28365	0.66	-1.1
6,183,625	+		AO353_28365	0.68	+0.1
6,183,625	+		AO353_28365	0.68	+1.5
6,183,626	-		AO353_28365	0.68	+1.7
6,183,626	-		AO353_28365	0.68	+1.3
6,183,688	+		AO353_28365	0.72	-0.1
6,183,688	+		AO353_28365	0.72	-1.9
6,183,688	+		AO353_28365	0.72	-2.1
6,183,689	-		AO353_28365	0.72	+1.0
6,183,689	-		AO353_28365	0.72	+0.5
6,183,813	+		AO353_28365	0.81	-2.1
6,183,813	+		AO353_28365	0.81	+0.0
6,183,813	+		AO353_28365	0.81	+0.3
6,183,813	+		AO353_28365	0.81	+0.1
6,183,813	+		AO353_28365	0.81	+0.8
6,183,813	+		AO353_28365	0.81	-1.6
6,183,814	-		AO353_28365	0.81	-0.3
6,183,814	-		AO353_28365	0.81	+0.9
6,183,814	-		AO353_28365	0.81	+0.1
6,183,814	-		AO353_28365	0.81	+0.2
6,183,817	+		AO353_28365	0.81	-1.6
6,183,817	+		AO353_28365	0.81	-3.1
6,183,817	+		AO353_28365	0.81	+1.4
6,183,817	+		AO353_28365	0.81	-1.1
6,183,817	+		AO353_28365	0.81	-0.3
6,183,817	+		AO353_28365	0.81	-0.2
6,183,817	+		AO353_28365	0.81	-0.2
6,183,817	+		AO353_28365	0.81	-0.6
6,183,817	+		AO353_28365	0.81	-0.1
6,183,817	+		AO353_28365	0.81	+1.0
6,183,817	+		AO353_28365	0.81	-0.6
6,183,817	+		AO353_28365	0.81	-0.1
6,183,818	-		AO353_28365	0.82	+0.0
6,183,818	-		AO353_28365	0.82	+1.0
6,183,818	-		AO353_28365	0.82	+0.6
6,183,818	-		AO353_28365	0.82	-1.6
6,183,818	-		AO353_28365	0.82	-1.9
6,183,922	+		AO353_28365	0.89	-0.1
6,183,934	+		AO353_28365	0.90	+1.0
6,183,934	+		AO353_28365	0.90	+0.3
6,183,934	+		AO353_28365	0.90	-2.5
6,183,935	-				-1.0
6,183,935	-				-2.6
6,183,942	+				+2.3
6,183,942	+				-0.6
6,183,942	+				+0.4
6,184,001	+				+1.0
6,184,036	+				-0.1
6,184,036	+				+0.5
6,184,036	+				-0.9
6,184,036	+				-2.3
6,184,037	-				+0.2
6,184,037	-				+1.3
6,184,037	-				+0.1
6,184,037	-				-0.5
6,184,042	+				-0.9
6,184,042	+				-0.5
6,184,042	+				+0.5
6,184,042	+				+1.3
6,184,042	+				+0.3
6,184,042	+				-1.1
6,184,043	-				+0.5
6,184,043	-				-0.7
6,184,045	+				-1.0
6,184,046	-				+1.3
6,184,154	-				-0.3
6,184,224	-				+0.4
6,184,263	+		AO353_28370	0.13	-0.3
6,184,263	+		AO353_28370	0.13	+0.2
6,184,263	+		AO353_28370	0.13	+1.2
6,184,264	-		AO353_28370	0.13	+2.3
6,184,264	-		AO353_28370	0.13	-1.4
6,184,320	+		AO353_28370	0.20	+0.9
6,184,359	+		AO353_28370	0.24	+1.7
6,184,397	+		AO353_28370	0.29	-0.3
6,184,397	+		AO353_28370	0.29	+0.7
6,184,397	+		AO353_28370	0.29	-0.7
6,184,398	-		AO353_28370	0.29	+1.4
6,184,422	+		AO353_28370	0.32	+0.7
6,184,579	-		AO353_28370	0.50	+0.9
6,184,579	-		AO353_28370	0.50	-3.3
6,184,579	-		AO353_28370	0.50	+1.3
6,184,579	-		AO353_28370	0.50	+0.4
6,184,663	-		AO353_28370	0.60	+0.6
6,184,804	+		AO353_28370	0.76	-0.9
6,184,804	+		AO353_28370	0.76	+0.4
6,184,804	+		AO353_28370	0.76	+0.5
6,184,805	-		AO353_28370	0.76	+0.7
6,184,805	-		AO353_28370	0.76	-0.3
6,184,808	+		AO353_28370	0.77	-0.1
6,184,808	+		AO353_28370	0.77	-1.2
6,184,808	+		AO353_28370	0.77	-0.7
6,184,809	-		AO353_28370	0.77	-2.0
6,184,809	-		AO353_28370	0.77	-0.3
6,184,809	-		AO353_28370	0.77	-0.9
6,184,809	-		AO353_28370	0.77	-0.3
6,184,809	-		AO353_28370	0.77	+0.7
6,184,809	-		AO353_28370	0.77	+3.3
6,184,809	-		AO353_28370	0.77	-2.3
6,184,809	-		AO353_28370	0.77	+0.9
6,184,809	-		AO353_28370	0.77	+1.1
6,184,809	-		AO353_28370	0.77	+1.0
6,184,809	-		AO353_28370	0.77	+0.5
6,184,809	-		AO353_28370	0.77	-0.6
6,184,842	+		AO353_28370	0.81	+0.5
6,184,842	+		AO353_28370	0.81	-0.1
6,184,882	+		AO353_28370	0.85	-0.1
6,184,882	+		AO353_28370	0.85	-0.9
6,184,883	-		AO353_28370	0.85	+0.8
6,184,883	-		AO353_28370	0.85	-0.7
6,184,903	+		AO353_28370	0.88	+0.7
6,184,904	+		AO353_28370	0.88	+0.3
6,184,904	-		AO353_28370	0.88	-0.3
6,184,904	-		AO353_28370	0.88	-0.2
6,184,916	-		AO353_28370	0.89	+0.7
6,184,950	-				+1.0
6,184,997	+				+2.7
6,184,998	-				-0.9
6,184,998	-				-1.8
6,184,998	-				+0.7
6,184,998	-				+0.7
6,185,017	+				-0.9
6,185,018	-				-0.6
6,185,026	+				-1.3
6,185,027	-				+0.3
6,185,027	-				-1.9
6,185,027	-				-0.2
6,185,027	-				+1.3
6,185,027	-				+0.7