Experiment: N1B4wt with N2E3m denitrifying replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27330 and AO353_27335 overlap by 4 nucleotides AO353_27335 and AO353_27340 are separated by 2 nucleotides AO353_27340 and AO353_27345 are separated by 1 nucleotides AO353_27345 and AO353_27350 are separated by 12 nucleotides AO353_27350 and AO353_27355 are separated by 12 nucleotides
AO353_27330: AO353_27330 - hypothetical protein, at 5,973,666 to 5,974,331
_27330
AO353_27335: AO353_27335 - hypothetical protein, at 5,974,328 to 5,974,642
_27335
AO353_27340: AO353_27340 - hypothetical protein, at 5,974,645 to 5,974,869
_27340
AO353_27345: AO353_27345 - capsid protein, at 5,974,871 to 5,975,899
_27345
AO353_27350: AO353_27350 - hypothetical protein, at 5,975,912 to 5,976,262
_27350
AO353_27355: AO353_27355 - hypothetical protein, at 5,976,275 to 5,977,507
_27355
Position (kb) 5974
5975
5976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5973.946 kb on + strand, within AO353_27330 at 5973.947 kb on - strand, within AO353_27330 at 5973.947 kb on - strand, within AO353_27330 at 5973.947 kb on - strand, within AO353_27330 at 5973.952 kb on + strand, within AO353_27330 at 5973.958 kb on + strand, within AO353_27330 at 5973.959 kb on - strand, within AO353_27330 at 5973.974 kb on - strand, within AO353_27330 at 5973.993 kb on + strand, within AO353_27330 at 5974.109 kb on + strand, within AO353_27330 at 5974.109 kb on + strand, within AO353_27330 at 5974.109 kb on + strand, within AO353_27330 at 5974.113 kb on + strand, within AO353_27330 at 5974.114 kb on - strand, within AO353_27330 at 5974.114 kb on - strand, within AO353_27330 at 5974.166 kb on + strand, within AO353_27330 at 5974.167 kb on - strand, within AO353_27330 at 5974.347 kb on - strand at 5974.379 kb on + strand, within AO353_27335 at 5974.379 kb on + strand, within AO353_27335 at 5974.380 kb on - strand, within AO353_27335 at 5974.380 kb on - strand, within AO353_27335 at 5974.395 kb on + strand, within AO353_27335 at 5974.646 kb on + strand at 5974.647 kb on - strand at 5974.791 kb on - strand, within AO353_27340 at 5974.791 kb on - strand, within AO353_27340 at 5974.887 kb on + strand at 5974.887 kb on + strand at 5974.888 kb on - strand at 5974.888 kb on - strand at 5974.888 kb on - strand at 5975.040 kb on + strand, within AO353_27345 at 5975.040 kb on + strand, within AO353_27345 at 5975.041 kb on - strand, within AO353_27345 at 5975.047 kb on + strand, within AO353_27345 at 5975.047 kb on + strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.048 kb on - strand, within AO353_27345 at 5975.127 kb on + strand, within AO353_27345 at 5975.128 kb on - strand, within AO353_27345 at 5975.139 kb on + strand, within AO353_27345 at 5975.140 kb on - strand, within AO353_27345 at 5975.145 kb on + strand, within AO353_27345 at 5975.182 kb on - strand, within AO353_27345 at 5975.182 kb on - strand, within AO353_27345 at 5975.182 kb on - strand, within AO353_27345 at 5975.252 kb on + strand, within AO353_27345 at 5975.253 kb on - strand, within AO353_27345 at 5975.662 kb on + strand, within AO353_27345 at 5975.663 kb on - strand, within AO353_27345 at 5975.663 kb on - strand, within AO353_27345 at 5975.664 kb on + strand, within AO353_27345 at 5975.664 kb on + strand, within AO353_27345 at 5975.664 kb on + strand, within AO353_27345 at 5975.664 kb on + strand, within AO353_27345 at 5975.665 kb on - strand, within AO353_27345 at 5975.665 kb on - strand, within AO353_27345 at 5975.665 kb on - strand, within AO353_27345 at 5975.665 kb on - strand, within AO353_27345 at 5975.665 kb on - strand, within AO353_27345 at 5975.676 kb on + strand, within AO353_27345 at 5975.676 kb on + strand, within AO353_27345 at 5975.676 kb on + strand, within AO353_27345 at 5975.677 kb on - strand, within AO353_27345 at 5975.677 kb on - strand, within AO353_27345 at 5975.677 kb on - strand, within AO353_27345 at 5975.677 kb on - strand, within AO353_27345 at 5975.677 kb on - strand, within AO353_27345 at 5975.691 kb on + strand, within AO353_27345 at 5975.692 kb on - strand, within AO353_27345 at 5975.692 kb on - strand, within AO353_27345 at 5975.893 kb on + strand at 5976.117 kb on + strand, within AO353_27350 at 5976.117 kb on + strand, within AO353_27350 at 5976.117 kb on + strand, within AO353_27350 at 5976.118 kb on - strand, within AO353_27350 at 5976.118 kb on - strand, within AO353_27350 at 5976.160 kb on + strand, within AO353_27350 at 5976.237 kb on + strand at 5976.237 kb on + strand at 5976.237 kb on + strand at 5976.237 kb on + strand at 5976.237 kb on + strand at 5976.237 kb on + strand at 5976.237 kb on + strand at 5976.237 kb on + strand at 5976.237 kb on + strand at 5976.238 kb on - strand at 5976.238 kb on - strand at 5976.238 kb on - strand at 5976.238 kb on - strand at 5976.238 kb on - strand at 5976.312 kb on - strand at 5976.421 kb on + strand, within AO353_27355 at 5976.421 kb on + strand, within AO353_27355 at 5976.422 kb on - strand, within AO353_27355 at 5976.788 kb on + strand, within AO353_27355 at 5976.788 kb on + strand, within AO353_27355 at 5976.788 kb on + strand at 5976.788 kb on + strand, within AO353_27355 at 5976.788 kb on + strand, within AO353_27355 at 5976.789 kb on - strand, within AO353_27355
Per-strain Table
Position Strand Gene LocusTag Fraction N1B4wt with N2E3m denitrifying replicate C remove 5,973,946 + AO353_27330 0.42 +1.1 5,973,947 - AO353_27330 0.42 +0.3 5,973,947 - AO353_27330 0.42 -1.0 5,973,947 - AO353_27330 0.42 -0.2 5,973,952 + AO353_27330 0.43 -1.0 5,973,958 + AO353_27330 0.44 -0.4 5,973,959 - AO353_27330 0.44 -1.1 5,973,974 - AO353_27330 0.46 -0.6 5,973,993 + AO353_27330 0.49 -0.7 5,974,109 + AO353_27330 0.67 -0.4 5,974,109 + AO353_27330 0.67 -0.0 5,974,109 + AO353_27330 0.67 +0.3 5,974,113 + AO353_27330 0.67 -0.3 5,974,114 - AO353_27330 0.67 +1.8 5,974,114 - AO353_27330 0.67 +0.2 5,974,166 + AO353_27330 0.75 +0.4 5,974,167 - AO353_27330 0.75 -0.5 5,974,347 - +0.6 5,974,379 + AO353_27335 0.16 -0.2 5,974,379 + AO353_27335 0.16 +0.2 5,974,380 - AO353_27335 0.17 -1.8 5,974,380 - AO353_27335 0.17 +1.5 5,974,395 + AO353_27335 0.21 +1.4 5,974,646 + +0.0 5,974,647 - -0.4 5,974,791 - AO353_27340 0.65 -1.0 5,974,791 - AO353_27340 0.65 +0.2 5,974,887 + +0.0 5,974,887 + +0.4 5,974,888 - -0.4 5,974,888 - -1.2 5,974,888 - +0.6 5,975,040 + AO353_27345 0.16 -0.9 5,975,040 + AO353_27345 0.16 -2.5 5,975,041 - AO353_27345 0.17 -2.2 5,975,047 + AO353_27345 0.17 +0.6 5,975,047 + AO353_27345 0.17 +0.6 5,975,048 - AO353_27345 0.17 -1.2 5,975,048 - AO353_27345 0.17 +0.9 5,975,048 - AO353_27345 0.17 +1.0 5,975,048 - AO353_27345 0.17 -2.2 5,975,048 - AO353_27345 0.17 -3.2 5,975,048 - AO353_27345 0.17 -3.1 5,975,127 + AO353_27345 0.25 +0.2 5,975,128 - AO353_27345 0.25 +1.4 5,975,139 + AO353_27345 0.26 +0.3 5,975,140 - AO353_27345 0.26 -0.7 5,975,145 + AO353_27345 0.27 +0.2 5,975,182 - AO353_27345 0.30 +0.6 5,975,182 - AO353_27345 0.30 +0.6 5,975,182 - AO353_27345 0.30 +1.5 5,975,252 + AO353_27345 0.37 -1.0 5,975,253 - AO353_27345 0.37 -0.2 5,975,662 + AO353_27345 0.77 +0.5 5,975,663 - AO353_27345 0.77 -2.2 5,975,663 - AO353_27345 0.77 -1.4 5,975,664 + AO353_27345 0.77 -0.4 5,975,664 + AO353_27345 0.77 -0.0 5,975,664 + AO353_27345 0.77 +1.1 5,975,664 + AO353_27345 0.77 -2.8 5,975,665 - AO353_27345 0.77 -0.7 5,975,665 - AO353_27345 0.77 -0.7 5,975,665 - AO353_27345 0.77 +1.0 5,975,665 - AO353_27345 0.77 -1.5 5,975,665 - AO353_27345 0.77 -0.2 5,975,676 + AO353_27345 0.78 -1.0 5,975,676 + AO353_27345 0.78 -2.0 5,975,676 + AO353_27345 0.78 -1.1 5,975,677 - AO353_27345 0.78 -1.0 5,975,677 - AO353_27345 0.78 +1.5 5,975,677 - AO353_27345 0.78 -0.4 5,975,677 - AO353_27345 0.78 +0.6 5,975,677 - AO353_27345 0.78 +0.6 5,975,691 + AO353_27345 0.80 -2.0 5,975,692 - AO353_27345 0.80 -0.2 5,975,692 - AO353_27345 0.80 -0.6 5,975,893 + +0.3 5,976,117 + AO353_27350 0.58 +1.1 5,976,117 + AO353_27350 0.58 +0.9 5,976,117 + AO353_27350 0.58 -1.0 5,976,118 - AO353_27350 0.59 +0.3 5,976,118 - AO353_27350 0.59 +0.3 5,976,160 + AO353_27350 0.71 +1.2 5,976,237 + +0.3 5,976,237 + -0.6 5,976,237 + +0.9 5,976,237 + -0.6 5,976,237 + +0.1 5,976,237 + -0.5 5,976,237 + -1.2 5,976,237 + +1.4 5,976,237 + -1.2 5,976,238 - -2.2 5,976,238 - -0.3 5,976,238 - -1.4 5,976,238 - +0.3 5,976,238 - -1.1 5,976,312 - +1.6 5,976,421 + AO353_27355 0.12 -1.3 5,976,421 + AO353_27355 0.12 +0.6 5,976,422 - AO353_27355 0.12 -0.1 5,976,788 + AO353_27355 0.42 +0.6 5,976,788 + AO353_27355 0.42 -2.6 5,976,788 + +0.6 5,976,788 + AO353_27355 0.42 +0.4 5,976,788 + AO353_27355 0.42 +0.1 5,976,789 - AO353_27355 0.42 +2.2
Or see this region's nucleotide sequence