Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26005

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
5,730,068	+				-2.3
5,730,069	-				-0.5
5,730,072	+				+0.7
5,730,072	+				-0.5
5,730,072	+				+1.2
5,730,072	+				-1.9
5,730,073	-				-0.5
5,730,073	-				-0.3
5,730,087	+				-2.1
5,730,087	+				-0.2
5,730,087	+				+1.0
5,730,087	+				-0.5
5,730,087	+				+0.3
5,730,087	+				-0.3
5,730,087	+				+0.7
5,730,087	+				-0.1
5,730,088	-				-0.8
5,730,088	-				+3.0
5,730,088	-				-0.2
5,730,088	-				+0.7
5,730,088	-				+0.7
5,730,088	-				-0.1
5,730,106	+				+1.2
5,730,106	+				+0.5
5,730,107	-				+0.0
5,730,107	-				+0.5
5,730,109	+				+0.0
5,730,110	-				-1.5
5,730,126	-				-0.1
5,730,147	+				-1.5
5,730,147	+				-0.0
5,730,184	+				-2.3
5,730,184	+				-1.9
5,730,184	+				+0.9
5,730,185	-				+0.5
5,730,185	-				-0.5
5,730,185	-				+3.4
5,730,185	-				+0.5
5,730,185	-				-0.3
5,730,213	-				+0.5
5,730,213	-				+2.2
5,730,213	-				-0.5
5,730,235	+				-0.5
5,730,238	+				-0.8
5,730,238	+				-1.5
5,730,239	-				+2.0
5,730,239	-				-2.5
5,730,239	-				+0.1
5,730,285	+				-1.1
5,730,286	-				+1.8
5,730,294	-				+2.5
5,730,326	-				+0.6
5,730,326	-				+1.7
5,730,333	-				-0.3
5,730,333	-				-2.2
5,730,416	+		AO353_26000	0.12	-0.5
5,730,416	+		AO353_26000	0.12	+0.9
5,730,416	+		AO353_26000	0.12	-0.5
5,730,416	+		AO353_26000	0.12	-2.9
5,730,416	+		AO353_26000	0.12	-1.5
5,730,416	+		AO353_26000	0.12	-0.5
5,730,417	-		AO353_26000	0.12	-2.3
5,730,417	-		AO353_26000	0.12	-2.3
5,730,417	-		AO353_26000	0.12	-1.3
5,730,417	-		AO353_26000	0.12	-0.5
5,730,417	-		AO353_26000	0.12	+0.5
5,730,417	-		AO353_26000	0.12	+0.5
5,730,417	-		AO353_26000	0.12	-0.0
5,730,417	-		AO353_26000	0.12	-0.5
5,730,497	+		AO353_26000	0.25	-1.9
5,730,497	+		AO353_26000	0.25	-1.1
5,730,497	+		AO353_26000	0.25	-2.5
5,730,498	-		AO353_26000	0.25	-0.9
5,730,498	-		AO353_26000	0.25	+0.9
5,730,498	-		AO353_26000	0.25	-0.5
5,730,498	-		AO353_26000	0.25	-0.4
5,730,498	-		AO353_26000	0.25	-1.2
5,730,498	-		AO353_26000	0.25	-0.5
5,730,498	-				-0.9
5,730,499	+		AO353_26000	0.25	-0.3
5,730,499	+				-2.5
5,730,500	-		AO353_26000	0.25	-0.6
5,730,500	-		AO353_26000	0.25	+0.2
5,730,500	-		AO353_26000	0.25	+0.5
5,730,500	-		AO353_26000	0.25	-0.5
5,730,500	-		AO353_26000	0.25	-1.5
5,730,549	-		AO353_26000	0.33	+0.2
5,730,549	-		AO353_26000	0.33	-0.7
5,730,554	+		AO353_26000	0.34	-0.7
5,730,554	+		AO353_26000	0.34	+0.1
5,730,554	+		AO353_26000	0.34	-2.1
5,730,554	+		AO353_26000	0.34	-2.5
5,730,555	-		AO353_26000	0.34	-1.9
5,730,555	-		AO353_26000	0.34	-0.3
5,730,555	-		AO353_26000	0.34	-1.7
5,730,555	-		AO353_26000	0.34	+0.5
5,730,584	+		AO353_26000	0.39	-0.1
5,730,585	-		AO353_26000	0.39	+0.5
5,730,585	-		AO353_26000	0.39	+0.0
5,730,593	+		AO353_26000	0.40	+0.1
5,730,593	+		AO353_26000	0.40	-1.9
5,730,593	+		AO353_26000	0.40	+0.5
5,730,593	+		AO353_26000	0.40	-1.1
5,730,593	+		AO353_26000	0.40	-0.4
5,730,728	+		AO353_26000	0.61	+1.2
5,730,728	+		AO353_26000	0.61	-2.9
5,730,728	+		AO353_26000	0.61	-0.5
5,730,728	+		AO353_26000	0.61	-2.1
5,730,728	+		AO353_26000	0.61	-0.7
5,730,728	+		AO353_26000	0.61	+0.9
5,730,729	-		AO353_26000	0.61	+0.6
5,730,729	-		AO353_26000	0.61	-1.7
5,730,729	-		AO353_26000	0.61	+0.2
5,730,729	-		AO353_26000	0.61	-1.9
5,730,729	-		AO353_26000	0.61	-0.1
5,730,729	-		AO353_26000	0.61	-0.2
5,730,729	-		AO353_26000	0.61	-1.9
5,730,741	+		AO353_26000	0.63	-1.4
5,730,742	-		AO353_26000	0.64	-0.3
5,730,742	-		AO353_26000	0.64	+0.9
5,730,991	+				+1.6
5,731,003	+				+1.6
5,731,003	+				-1.9
5,731,003	+				-2.1
5,731,004	-				+1.0
5,731,005	+				-2.7
5,731,005	+				-1.1
5,731,005	+				-0.0
5,731,005	+				+0.5
5,731,005	+				+0.6
5,731,005	+				+0.5
5,731,006	-				-0.3
5,731,006	-				-0.4
5,731,006	-				-0.9
5,731,006	-				-0.2
5,731,006	-				-0.1
5,731,006	-				-0.1
5,731,033	+				-0.5
5,731,033	+				-1.9
5,731,033	+				-2.7
5,731,034	-				-0.8
5,731,034	-				+2.0
5,731,070	+				-1.3
5,731,071	-				+0.0
5,731,107	-		AO353_26005	0.12	-0.1
5,731,107	-		AO353_26005	0.12	-1.7
5,731,143	+		AO353_26005	0.22	+0.9
5,731,165	+		AO353_26005	0.28	-1.1
5,731,166	-		AO353_26005	0.28	-0.5
5,731,182	+		AO353_26005	0.32	-2.5
5,731,182	+		AO353_26005	0.32	+0.1
5,731,182	+		AO353_26005	0.32	+0.9
5,731,183	-		AO353_26005	0.33	+0.3
5,731,183	-		AO353_26005	0.33	-2.1
5,731,226	+		AO353_26005	0.44	-0.2
5,731,227	-		AO353_26005	0.44	+0.5
5,731,227	-		AO353_26005	0.44	-1.3
5,731,324	+		AO353_26005	0.70	-1.9
5,731,324	+		AO353_26005	0.70	-2.5
5,731,324	+		AO353_26005	0.70	-0.1
5,731,324	+		AO353_26005	0.70	-1.5
5,731,324	+		AO353_26005	0.70	-1.5
5,731,324	+		AO353_26005	0.70	+0.8
5,731,325	-		AO353_26005	0.70	-1.6
5,731,325	-		AO353_26005	0.70	-0.3
5,731,325	-		AO353_26005	0.70	-2.0
5,731,325	-		AO353_26005	0.70	-1.7
5,731,325	-		AO353_26005	0.70	-0.5
5,731,325	-		AO353_26005	0.70	+2.8
5,731,325	-		AO353_26005	0.70	+0.3
5,731,360	+		AO353_26005	0.79	+0.6
5,731,361	-		AO353_26005	0.80	+0.9
5,731,361	-		AO353_26005	0.80	-1.5
5,731,361	-		AO353_26005	0.80	+0.5
5,731,362	+		AO353_26005	0.80	+0.4
5,731,363	-		AO353_26005	0.80	+0.3
5,731,363	-		AO353_26005	0.80	-1.3
5,731,391	+				-0.5
5,731,392	-		AO353_26005	0.88	+1.0
5,731,394	+		AO353_26005	0.88	-1.5
5,731,394	+		AO353_26005	0.88	-1.1
5,731,394	+		AO353_26005	0.88	-1.3
5,731,394	+		AO353_26005	0.88	-3.3
5,731,394	+		AO353_26005	0.88	-1.4
5,731,394	+		AO353_26005	0.88	-0.3
5,731,394	+		AO353_26005	0.88	-2.7
5,731,394	+		AO353_26005	0.88	-1.9
5,731,395	-		AO353_26005	0.89	+1.5
5,731,395	-		AO353_26005	0.89	+0.5
5,731,395	-		AO353_26005	0.89	+2.8
5,731,400	+				+0.5
5,731,400	+				-1.5
5,731,400	+				-1.2
5,731,400	+				-0.2
5,731,400	+				-0.2
5,731,401	-				+0.5
5,731,401	-				-0.9
5,731,401	-				-0.5
5,731,401	-				+0.7
5,731,401	-				+2.0
5,731,401	-				+1.0
5,731,423	-				-0.3
5,731,423	-				-1.3
5,731,450	+				+1.1
5,731,503	+				+0.7
5,731,654	+				-0.1
5,731,655	-				+0.1
5,731,655	-				+0.8
5,731,685	-		AO353_26010	0.12	+1.0
5,731,809	+		AO353_26010	0.73	-0.7
5,731,809	+		AO353_26010	0.73	+0.5
5,731,909	-				+0.7
5,731,909	-				+0.8
5,731,909	-				-1.5
5,731,910	+				-1.3
5,731,910	+				+0.0
5,731,910	+				+0.0
5,731,910	+				+1.3
5,731,911	-				-2.1
5,731,911	-				-0.5
5,731,911	-				+0.3
5,731,911	-				-1.1
5,731,928	+				+0.3
5,731,929	-				-0.7
5,731,929	-				-1.5
5,731,929	-				+0.5
5,731,963	+				-1.3
5,731,963	+				-0.1
5,732,021	+				-0.5
5,732,021	+				+0.5
5,732,021	+				+0.5
5,732,021	+				-0.6
5,732,021	+				-0.6
5,732,021	+				-0.2
5,732,021	+				+0.8
5,732,021	+				+0.8
5,732,021	+				+0.5
5,732,021	+				-2.3
5,732,021	+				-0.6
5,732,022	-				-0.1
5,732,022	-				-0.5
5,732,022	-				+1.5
5,732,022	-				+0.0
5,732,022	-				+0.9
5,732,022	-				-0.5
5,732,022	-				+0.9
5,732,022	-				-0.4
5,732,022	-				-2.2
5,732,022	-				-1.3
5,732,022	-				-0.1
5,732,022	-				+0.5
5,732,022	-				-1.5
5,732,022	-				-2.3
5,732,022	-				-1.0
5,732,022	-				-2.2
5,732,022	-				+0.2
5,732,022	-				-2.1
5,732,023	+				-0.6
5,732,023	+				-0.4
5,732,023	+				+0.8
5,732,023	+				+0.1
5,732,023	+				-0.5
5,732,023	+				+0.9
5,732,024	-				-2.2
5,732,024	-				-1.7
5,732,024	-				+0.3
5,732,024	-				-0.3
5,732,024	-				+1.4
5,732,024	-				+0.5
5,732,024	-				+0.5
5,732,069	+				-0.1
5,732,069	+				+0.9
5,732,070	-				+0.0
5,732,073	+				-1.5
5,732,074	-				-1.9
5,732,078	+				-3.0
5,732,078	+				-0.4
5,732,078	+				+0.5
5,732,078	+				+0.1
5,732,078	+				-1.1
5,732,078	+				-0.1
5,732,079	-				+0.9
5,732,079	-				-2.3
5,732,090	+				-0.7
5,732,090	+				+1.2
5,732,090	+				+0.5
5,732,090	+				-0.5
5,732,090	+				+2.0
5,732,090	+				-1.0
5,732,091	-				+0.9
5,732,091	-				-0.5
5,732,091	-				+0.6
5,732,091	-				+0.0
5,732,091	-				+1.5
5,732,091	-				+0.3
5,732,091	-				+0.8
5,732,091	-				-0.9
5,732,091	-				-0.3
5,732,131	-				+0.0
5,732,279	+				+0.7
5,732,279	+				+0.0
5,732,279	+				+0.2
5,732,279	+				-0.1
5,732,323	+				-0.1
5,732,324	-				+0.1
5,732,324	-				-1.7
5,732,324	-				+0.5
5,732,327	-				-1.5