Experiment: N1B4wt with N2E3m denitrifying replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25235 and AO353_25240 are separated by 11 nucleotides AO353_25240 and AO353_25245 are separated by 68 nucleotides AO353_25245 and AO353_25250 are separated by 33 nucleotides
AO353_25235: AO353_25235 - oxidase, at 5,566,461 to 5,567,702
_25235
AO353_25240: AO353_25240 - cytochrome C552, at 5,567,714 to 5,568,352
_25240
AO353_25245: AO353_25245 - regulator, at 5,568,421 to 5,569,053
_25245
AO353_25250: AO353_25250 - histidine kinase, at 5,569,087 to 5,570,448
_25250
Position (kb) 5568
5569
5570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5567.674 kb on + strand at 5567.885 kb on + strand, within AO353_25240 at 5567.885 kb on + strand, within AO353_25240 at 5567.885 kb on + strand, within AO353_25240 at 5567.886 kb on - strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand at 5567.955 kb on + strand, within AO353_25240 at 5567.955 kb on + strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.956 kb on - strand, within AO353_25240 at 5567.957 kb on + strand, within AO353_25240 at 5567.957 kb on + strand, within AO353_25240 at 5567.957 kb on + strand, within AO353_25240 at 5567.957 kb on + strand, within AO353_25240 at 5567.957 kb on + strand, within AO353_25240 at 5567.958 kb on - strand, within AO353_25240 at 5567.958 kb on - strand, within AO353_25240 at 5567.958 kb on - strand, within AO353_25240 at 5567.958 kb on - strand, within AO353_25240 at 5568.018 kb on - strand, within AO353_25240 at 5568.018 kb on - strand, within AO353_25240 at 5568.048 kb on + strand, within AO353_25240 at 5568.048 kb on + strand, within AO353_25240 at 5568.048 kb on + strand, within AO353_25240 at 5568.048 kb on + strand, within AO353_25240 at 5568.049 kb on - strand, within AO353_25240 at 5568.049 kb on - strand, within AO353_25240 at 5568.049 kb on - strand, within AO353_25240 at 5568.097 kb on - strand, within AO353_25240 at 5568.123 kb on + strand, within AO353_25240 at 5568.124 kb on - strand, within AO353_25240 at 5568.124 kb on - strand, within AO353_25240 at 5568.163 kb on + strand at 5568.163 kb on + strand, within AO353_25240 at 5568.163 kb on + strand, within AO353_25240 at 5568.163 kb on + strand, within AO353_25240 at 5568.164 kb on - strand, within AO353_25240 at 5568.164 kb on - strand, within AO353_25240 at 5568.164 kb on - strand, within AO353_25240 at 5568.164 kb on - strand, within AO353_25240 at 5568.164 kb on - strand, within AO353_25240 at 5568.164 kb on - strand, within AO353_25240 at 5568.171 kb on + strand, within AO353_25240 at 5568.203 kb on + strand, within AO353_25240 at 5568.203 kb on + strand, within AO353_25240 at 5568.204 kb on - strand, within AO353_25240 at 5568.234 kb on + strand, within AO353_25240 at 5568.235 kb on - strand, within AO353_25240 at 5568.303 kb on + strand at 5568.375 kb on + strand at 5568.422 kb on + strand at 5568.422 kb on + strand at 5568.423 kb on - strand at 5568.452 kb on + strand at 5568.452 kb on + strand at 5568.452 kb on + strand at 5568.665 kb on + strand, within AO353_25245 at 5568.737 kb on + strand, within AO353_25245 at 5568.773 kb on + strand, within AO353_25245 at 5568.773 kb on + strand, within AO353_25245 at 5568.773 kb on + strand, within AO353_25245 at 5568.773 kb on + strand, within AO353_25245 at 5568.773 kb on + strand, within AO353_25245 at 5568.774 kb on - strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand at 5568.779 kb on + strand, within AO353_25245 at 5568.779 kb on + strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.780 kb on - strand, within AO353_25245 at 5568.788 kb on + strand, within AO353_25245 at 5568.789 kb on - strand, within AO353_25245 at 5568.800 kb on - strand, within AO353_25245 at 5568.887 kb on - strand, within AO353_25245 at 5569.077 kb on - strand at 5569.210 kb on + strand at 5569.211 kb on - strand at 5569.211 kb on - strand at 5569.279 kb on + strand, within AO353_25250 at 5569.305 kb on + strand, within AO353_25250 at 5569.305 kb on + strand, within AO353_25250 at 5569.306 kb on - strand, within AO353_25250 at 5569.306 kb on - strand, within AO353_25250 at 5569.312 kb on + strand, within AO353_25250 at 5569.312 kb on + strand, within AO353_25250 at 5569.424 kb on + strand, within AO353_25250 at 5569.425 kb on - strand, within AO353_25250 at 5569.425 kb on - strand, within AO353_25250 at 5569.425 kb on - strand, within AO353_25250 at 5569.443 kb on + strand, within AO353_25250 at 5569.444 kb on - strand, within AO353_25250 at 5569.444 kb on - strand, within AO353_25250 at 5569.580 kb on - strand, within AO353_25250 at 5569.658 kb on - strand, within AO353_25250 at 5569.658 kb on - strand, within AO353_25250 at 5569.826 kb on - strand, within AO353_25250 at 5569.914 kb on - strand, within AO353_25250 at 5569.914 kb on - strand, within AO353_25250 at 5569.961 kb on + strand, within AO353_25250 at 5569.961 kb on + strand, within AO353_25250 at 5569.961 kb on + strand, within AO353_25250 at 5569.961 kb on + strand, within AO353_25250 at 5569.961 kb on + strand, within AO353_25250 at 5570.010 kb on - strand, within AO353_25250 at 5570.010 kb on - strand, within AO353_25250
Per-strain Table
Position Strand Gene LocusTag Fraction N1B4wt with N2E3m denitrifying replicate C remove 5,567,674 + -0.8 5,567,885 + AO353_25240 0.27 -1.9 5,567,885 + AO353_25240 0.27 +0.2 5,567,885 + AO353_25240 0.27 +1.1 5,567,886 - AO353_25240 0.27 +1.3 5,567,955 + AO353_25240 0.38 +0.6 5,567,955 + AO353_25240 0.38 +1.5 5,567,955 + AO353_25240 0.38 +0.1 5,567,955 + AO353_25240 0.38 +1.1 5,567,955 + AO353_25240 0.38 +0.4 5,567,955 + AO353_25240 0.38 -1.2 5,567,955 + AO353_25240 0.38 +1.1 5,567,955 + AO353_25240 0.38 +1.1 5,567,955 + AO353_25240 0.38 -0.2 5,567,955 + AO353_25240 0.38 -2.8 5,567,955 + AO353_25240 0.38 +1.8 5,567,955 + AO353_25240 0.38 +0.2 5,567,955 + AO353_25240 0.38 -2.6 5,567,955 + AO353_25240 0.38 +0.1 5,567,955 + AO353_25240 0.38 +0.2 5,567,955 + AO353_25240 0.38 +1.7 5,567,955 + AO353_25240 0.38 +1.5 5,567,955 + AO353_25240 0.38 -0.3 5,567,955 + AO353_25240 0.38 +1.0 5,567,955 + AO353_25240 0.38 +1.1 5,567,955 + +2.7 5,567,955 + AO353_25240 0.38 +2.4 5,567,955 + AO353_25240 0.38 +0.4 5,567,956 - AO353_25240 0.38 +1.6 5,567,956 - AO353_25240 0.38 +0.3 5,567,956 - AO353_25240 0.38 +0.4 5,567,956 - AO353_25240 0.38 -0.8 5,567,956 - AO353_25240 0.38 +1.1 5,567,956 - AO353_25240 0.38 +0.4 5,567,956 - AO353_25240 0.38 +0.9 5,567,956 - AO353_25240 0.38 -2.2 5,567,956 - AO353_25240 0.38 -0.6 5,567,956 - AO353_25240 0.38 +1.3 5,567,956 - AO353_25240 0.38 +0.7 5,567,956 - AO353_25240 0.38 -0.6 5,567,956 - AO353_25240 0.38 +1.0 5,567,956 - AO353_25240 0.38 +0.7 5,567,956 - AO353_25240 0.38 +1.8 5,567,956 - AO353_25240 0.38 -0.8 5,567,956 - AO353_25240 0.38 +0.8 5,567,956 - AO353_25240 0.38 +1.8 5,567,956 - AO353_25240 0.38 -1.9 5,567,956 - AO353_25240 0.38 -0.1 5,567,956 - AO353_25240 0.38 +0.8 5,567,957 + AO353_25240 0.38 +0.1 5,567,957 + AO353_25240 0.38 +0.7 5,567,957 + AO353_25240 0.38 +0.8 5,567,957 + AO353_25240 0.38 +1.7 5,567,957 + AO353_25240 0.38 +0.2 5,567,958 - AO353_25240 0.38 +0.4 5,567,958 - AO353_25240 0.38 +0.6 5,567,958 - AO353_25240 0.38 +0.2 5,567,958 - AO353_25240 0.38 -0.1 5,568,018 - AO353_25240 0.48 -1.2 5,568,018 - AO353_25240 0.48 -0.3 5,568,048 + AO353_25240 0.52 +1.1 5,568,048 + AO353_25240 0.52 -0.4 5,568,048 + AO353_25240 0.52 -1.9 5,568,048 + AO353_25240 0.52 -0.2 5,568,049 - AO353_25240 0.52 +0.5 5,568,049 - AO353_25240 0.52 +1.3 5,568,049 - AO353_25240 0.52 +0.9 5,568,097 - AO353_25240 0.60 +0.3 5,568,123 + AO353_25240 0.64 +1.4 5,568,124 - AO353_25240 0.64 +1.7 5,568,124 - AO353_25240 0.64 -1.2 5,568,163 + +0.4 5,568,163 + AO353_25240 0.70 -0.2 5,568,163 + AO353_25240 0.70 -2.2 5,568,163 + AO353_25240 0.70 -0.8 5,568,164 - AO353_25240 0.70 +2.2 5,568,164 - AO353_25240 0.70 +0.9 5,568,164 - AO353_25240 0.70 +0.4 5,568,164 - AO353_25240 0.70 +0.5 5,568,164 - AO353_25240 0.70 +0.8 5,568,164 - AO353_25240 0.70 +1.3 5,568,171 + AO353_25240 0.72 -1.2 5,568,203 + AO353_25240 0.77 +1.4 5,568,203 + AO353_25240 0.77 +0.4 5,568,204 - AO353_25240 0.77 +2.2 5,568,234 + AO353_25240 0.81 +0.6 5,568,235 - AO353_25240 0.82 +1.0 5,568,303 + -0.8 5,568,375 + +0.8 5,568,422 + -1.9 5,568,422 + +0.4 5,568,423 - -1.4 5,568,452 + -2.2 5,568,452 + -1.0 5,568,452 + -0.6 5,568,665 + AO353_25245 0.39 -0.2 5,568,737 + AO353_25245 0.50 -1.2 5,568,773 + AO353_25245 0.56 -1.2 5,568,773 + AO353_25245 0.56 -3.3 5,568,773 + AO353_25245 0.56 -1.2 5,568,773 + AO353_25245 0.56 -0.6 5,568,773 + AO353_25245 0.56 -0.8 5,568,774 - AO353_25245 0.56 -2.6 5,568,779 + AO353_25245 0.57 -0.0 5,568,779 + AO353_25245 0.57 -1.6 5,568,779 + AO353_25245 0.57 -0.6 5,568,779 + AO353_25245 0.57 +0.4 5,568,779 + AO353_25245 0.57 -1.9 5,568,779 + AO353_25245 0.57 -3.3 5,568,779 + AO353_25245 0.57 -1.6 5,568,779 + AO353_25245 0.57 -1.6 5,568,779 + AO353_25245 0.57 -1.9 5,568,779 + +1.0 5,568,779 + AO353_25245 0.57 -1.3 5,568,779 + AO353_25245 0.57 -1.2 5,568,780 - AO353_25245 0.57 -2.1 5,568,780 - AO353_25245 0.57 -1.9 5,568,780 - AO353_25245 0.57 -1.6 5,568,780 - AO353_25245 0.57 -2.9 5,568,780 - AO353_25245 0.57 -1.6 5,568,780 - AO353_25245 0.57 -3.1 5,568,780 - AO353_25245 0.57 +0.4 5,568,780 - AO353_25245 0.57 -0.4 5,568,780 - AO353_25245 0.57 -2.2 5,568,780 - AO353_25245 0.57 +0.4 5,568,780 - AO353_25245 0.57 -2.8 5,568,780 - AO353_25245 0.57 -0.6 5,568,788 + AO353_25245 0.58 -0.8 5,568,789 - AO353_25245 0.58 -2.2 5,568,800 - AO353_25245 0.60 -2.8 5,568,887 - AO353_25245 0.74 -0.6 5,569,077 - +1.8 5,569,210 + -3.5 5,569,211 - -1.9 5,569,211 - -1.7 5,569,279 + AO353_25250 0.14 -3.1 5,569,305 + AO353_25250 0.16 -3.3 5,569,305 + AO353_25250 0.16 -3.4 5,569,306 - AO353_25250 0.16 -1.4 5,569,306 - AO353_25250 0.16 -2.6 5,569,312 + AO353_25250 0.17 -1.3 5,569,312 + AO353_25250 0.17 -0.4 5,569,424 + AO353_25250 0.25 -1.2 5,569,425 - AO353_25250 0.25 +0.4 5,569,425 - AO353_25250 0.25 -1.9 5,569,425 - AO353_25250 0.25 -1.3 5,569,443 + AO353_25250 0.26 +1.4 5,569,444 - AO353_25250 0.26 -1.4 5,569,444 - AO353_25250 0.26 -3.3 5,569,580 - AO353_25250 0.36 -1.3 5,569,658 - AO353_25250 0.42 -1.6 5,569,658 - AO353_25250 0.42 -3.2 5,569,826 - AO353_25250 0.54 -0.9 5,569,914 - AO353_25250 0.61 -2.8 5,569,914 - AO353_25250 0.61 -2.1 5,569,961 + AO353_25250 0.64 -2.8 5,569,961 + AO353_25250 0.64 -2.2 5,569,961 + AO353_25250 0.64 +0.4 5,569,961 + AO353_25250 0.64 -0.2 5,569,961 + AO353_25250 0.64 -1.2 5,570,010 - AO353_25250 0.68 -0.6 5,570,010 - AO353_25250 0.68 -2.4
Or see this region's nucleotide sequence