Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22560

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
4,944,676	-		AO353_22555	0.25	-0.8
4,944,790	-		AO353_22555	0.34	+1.4
4,944,790	-		AO353_22555	0.34	+1.3
4,944,790	-		AO353_22555	0.34	-0.8
4,944,790	-		AO353_22555	0.34	-3.4
4,944,828	+		AO353_22555	0.37	+1.4
4,944,829	-		AO353_22555	0.37	-0.4
4,945,209	+		AO353_22555	0.68	-2.8
4,945,290	+		AO353_22555	0.74	+1.4
4,945,291	-		AO353_22555	0.74	+0.0
4,945,291	-		AO353_22555	0.74	+0.3
4,945,291	-		AO353_22555	0.74	-0.7
4,945,291	-		AO353_22555	0.74	+0.4
4,945,366	-		AO353_22555	0.80	-1.4
4,945,366	-		AO353_22555	0.80	+0.4
4,945,366	-		AO353_22555	0.80	+0.6
4,945,641	+				-0.4
4,945,642	-				+1.0
4,945,642	-				+0.0
4,945,642	-				-0.4
4,945,644	+				+0.4
4,945,644	+				-1.4
4,945,645	-				-1.6
4,945,645	-				+0.2
4,945,680	-		AO353_22560	0.15	+0.6
4,945,680	-		AO353_22560	0.15	-0.1
4,945,691	+		AO353_22560	0.20	-1.0
4,945,740	+		AO353_22560	0.38	-0.8
4,945,740	+		AO353_22560	0.38	+0.0
4,945,740	+		AO353_22560	0.38	-1.0
4,945,755	+		AO353_22560	0.44	-0.4
4,945,790	-		AO353_22560	0.57	+0.2
4,945,790	-		AO353_22560	0.57	-0.9
4,945,792	+				+1.6
4,945,793	-		AO353_22560	0.59	-1.4
4,945,793	-		AO353_22560	0.59	-0.1
4,945,809	-		AO353_22560	0.65	-1.0
4,945,811	+		AO353_22560	0.66	-0.2
4,945,812	-		AO353_22560	0.66	-1.7
4,945,868	-		AO353_22560	0.87	-2.0
4,945,890	-				+1.8
4,945,910	-				-1.0
4,945,986	+				-0.3
4,946,023	+				-0.5
4,946,037	+				+0.8
4,946,037	+				+0.6
4,946,037	+				-0.8
4,946,038	-				-0.4
4,946,038	-				+0.1
4,946,038	-				-0.3
4,946,095	+				-1.8
4,946,136	+				+0.0
4,946,136	+				+0.3
4,946,136	+				+1.1
4,946,136	+				+0.9
4,946,136	+				+0.6
4,946,137	-				+0.6
4,946,137	-				-1.4
4,946,164	+				-1.7
4,946,164	+				+0.8
4,946,164	+				+0.6
4,946,164	+				-1.4
4,946,165	-				+0.8
4,946,165	-				-2.0
4,946,194	+				+0.6
4,946,194	+				-0.5
4,946,194	+				+0.0
4,946,195	-				-2.0
4,946,195	-				-0.4
4,946,195	-				+1.2
4,946,309	-		AO353_22565	0.16	-0.1
4,946,309	-		AO353_22565	0.16	+1.3
4,946,402	+		AO353_22565	0.30	-2.2
4,946,402	+		AO353_22565	0.30	+0.1
4,946,402	+		AO353_22565	0.30	+0.3
4,946,402	+		AO353_22565	0.30	+1.6
4,946,403	-		AO353_22565	0.30	+1.6
4,946,445	+		AO353_22565	0.36	+0.6
4,946,529	+		AO353_22565	0.48	+1.1
4,946,529	+		AO353_22565	0.48	+0.2
4,946,529	+		AO353_22565	0.48	-1.7
4,946,530	-		AO353_22565	0.49	+0.3
4,946,530	-		AO353_22565	0.49	+0.6
4,946,530	-		AO353_22565	0.49	-1.1
4,946,616	+		AO353_22565	0.61	+0.8
4,946,715	+		AO353_22565	0.76	-1.5
4,946,715	+		AO353_22565	0.76	-2.4
4,946,715	+		AO353_22565	0.76	-1.4
4,946,715	+		AO353_22565	0.76	-0.4
4,946,716	-		AO353_22565	0.76	+0.6
4,946,772	+		AO353_22565	0.84	+0.6
4,946,772	+		AO353_22565	0.84	+0.2
4,946,772	+		AO353_22565	0.84	-0.4
4,946,772	+		AO353_22565	0.84	+1.9
4,946,772	+		AO353_22565	0.84	+1.4
4,946,772	+		AO353_22565	0.84	+2.8
4,946,772	+		AO353_22565	0.84	+0.6
4,946,772	+		AO353_22565	0.84	+0.1
4,946,773	-		AO353_22565	0.84	-0.4
4,946,773	-		AO353_22565	0.84	-1.4
4,946,773	-		AO353_22565	0.84	+0.8
4,946,773	-		AO353_22565	0.84	+0.6
4,946,773	-		AO353_22565	0.84	+0.4
4,946,856	+				+0.9
4,946,857	-				+0.2
4,946,857	-				+2.2
4,946,857	-				-1.0
4,946,857	-				-0.4
4,946,857	-				+1.2