Experiment: N1B4wt with N2E3m denitrifying replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22085 and AO353_22090 overlap by 23 nucleotides AO353_22090 and AO353_22095 are separated by 66 nucleotides
AO353_22085: AO353_22085 - MFS transporter, at 4,835,836 to 4,837,140
_22085
AO353_22090: AO353_22090 - nitrate/nitrite transporter NarK, at 4,837,118 to 4,838,515
_22090
AO353_22095: AO353_22095 - nitrate reductase, at 4,838,582 to 4,842,355
_22095
Position (kb)
4837
4838
4839 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4836.197 kb on - strand, within AO353_22085 at 4836.197 kb on - strand, within AO353_22085 at 4836.197 kb on - strand, within AO353_22085 at 4836.357 kb on + strand, within AO353_22085 at 4836.478 kb on + strand, within AO353_22085 at 4836.478 kb on + strand, within AO353_22085 at 4836.479 kb on - strand, within AO353_22085 at 4836.479 kb on - strand, within AO353_22085 at 4836.479 kb on - strand, within AO353_22085 at 4836.479 kb on - strand, within AO353_22085 at 4836.479 kb on - strand, within AO353_22085 at 4836.532 kb on + strand, within AO353_22085 at 4836.532 kb on + strand, within AO353_22085 at 4836.532 kb on + strand, within AO353_22085 at 4836.532 kb on + strand, within AO353_22085 at 4836.532 kb on + strand, within AO353_22085 at 4836.532 kb on + strand, within AO353_22085 at 4836.533 kb on - strand, within AO353_22085 at 4836.533 kb on - strand, within AO353_22085 at 4836.533 kb on - strand, within AO353_22085 at 4836.533 kb on - strand, within AO353_22085 at 4836.535 kb on + strand, within AO353_22085 at 4836.535 kb on + strand, within AO353_22085 at 4836.535 kb on + strand, within AO353_22085 at 4836.536 kb on - strand, within AO353_22085 at 4836.536 kb on - strand, within AO353_22085 at 4836.536 kb on - strand, within AO353_22085 at 4836.536 kb on - strand, within AO353_22085 at 4836.709 kb on + strand, within AO353_22085 at 4836.787 kb on - strand, within AO353_22085 at 4836.847 kb on + strand, within AO353_22085 at 4836.847 kb on + strand, within AO353_22085 at 4836.847 kb on + strand, within AO353_22085 at 4836.847 kb on + strand, within AO353_22085 at 4836.848 kb on - strand, within AO353_22085 at 4836.848 kb on - strand, within AO353_22085 at 4836.994 kb on + strand, within AO353_22085 at 4836.995 kb on - strand, within AO353_22085 at 4836.995 kb on - strand, within AO353_22085 at 4836.995 kb on - strand, within AO353_22085 at 4836.995 kb on - strand, within AO353_22085 at 4836.995 kb on - strand, within AO353_22085 at 4836.995 kb on - strand, within AO353_22085 at 4837.027 kb on + strand at 4837.027 kb on + strand at 4837.027 kb on + strand at 4837.028 kb on - strand at 4837.028 kb on - strand at 4837.041 kb on - strand at 4837.041 kb on - strand at 4837.041 kb on - strand at 4837.284 kb on + strand, within AO353_22090 at 4837.284 kb on + strand, within AO353_22090 at 4837.385 kb on + strand, within AO353_22090 at 4837.386 kb on - strand, within AO353_22090 at 4837.499 kb on + strand, within AO353_22090 at 4837.500 kb on - strand, within AO353_22090 at 4837.500 kb on - strand, within AO353_22090 at 4837.500 kb on - strand, within AO353_22090 at 4837.512 kb on + strand, within AO353_22090 at 4837.513 kb on - strand, within AO353_22090 at 4837.584 kb on - strand, within AO353_22090 at 4837.603 kb on + strand, within AO353_22090 at 4837.858 kb on + strand, within AO353_22090 at 4837.898 kb on + strand, within AO353_22090 at 4837.898 kb on + strand, within AO353_22090 at 4837.898 kb on + strand, within AO353_22090 at 4837.899 kb on - strand, within AO353_22090 at 4838.022 kb on + strand, within AO353_22090 at 4838.022 kb on + strand, within AO353_22090 at 4838.022 kb on + strand, within AO353_22090 at 4838.023 kb on - strand, within AO353_22090 at 4838.116 kb on - strand, within AO353_22090 at 4838.156 kb on + strand, within AO353_22090 at 4838.157 kb on - strand, within AO353_22090 at 4838.432 kb on + strand at 4838.432 kb on + strand at 4838.433 kb on - strand at 4838.433 kb on - strand at 4838.450 kb on + strand at 4838.450 kb on + strand at 4838.450 kb on + strand at 4838.513 kb on + strand at 4838.513 kb on + strand at 4838.514 kb on - strand at 4838.514 kb on - strand at 4838.514 kb on - strand at 4838.514 kb on - strand at 4838.514 kb on - strand at 4838.514 kb on - strand at 4838.593 kb on - strand at 4838.593 kb on - strand at 4838.593 kb on - strand at 4838.688 kb on - strand at 4838.706 kb on - strand at 4838.768 kb on + strand at 4838.769 kb on - strand at 4838.876 kb on + strand at 4838.876 kb on + strand at 4838.877 kb on - strand at 4838.877 kb on - strand at 4838.885 kb on + strand at 4838.885 kb on + strand at 4838.885 kb on + strand at 4838.885 kb on + strand at 4838.886 kb on - strand at 4838.886 kb on - strand at 4838.886 kb on - strand at 4838.886 kb on - strand at 4838.886 kb on - strand at 4838.892 kb on - strand at 4838.892 kb on - strand at 4838.892 kb on - strand at 4838.892 kb on - strand at 4839.023 kb on + strand, within AO353_22095 at 4839.024 kb on - strand at 4839.025 kb on + strand, within AO353_22095 at 4839.025 kb on + strand, within AO353_22095 at 4839.025 kb on + strand, within AO353_22095 at 4839.025 kb on + strand, within AO353_22095 at 4839.026 kb on - strand, within AO353_22095 at 4839.026 kb on - strand, within AO353_22095 at 4839.026 kb on - strand, within AO353_22095 at 4839.026 kb on - strand, within AO353_22095 at 4839.104 kb on + strand, within AO353_22095 at 4839.104 kb on + strand, within AO353_22095 at 4839.104 kb on + strand, within AO353_22095 at 4839.104 kb on + strand, within AO353_22095 at 4839.119 kb on + strand at 4839.119 kb on + strand, within AO353_22095 at 4839.119 kb on + strand, within AO353_22095 at 4839.120 kb on - strand, within AO353_22095 at 4839.120 kb on - strand, within AO353_22095 at 4839.176 kb on + strand, within AO353_22095 at 4839.177 kb on - strand, within AO353_22095 at 4839.177 kb on - strand, within AO353_22095 at 4839.177 kb on - strand, within AO353_22095 at 4839.177 kb on - strand, within AO353_22095 at 4839.230 kb on + strand, within AO353_22095 at 4839.240 kb on - strand, within AO353_22095 at 4839.312 kb on - strand, within AO353_22095 at 4839.312 kb on - strand, within AO353_22095 at 4839.312 kb on - strand, within AO353_22095 at 4839.323 kb on + strand, within AO353_22095 at 4839.323 kb on + strand, within AO353_22095 at 4839.323 kb on + strand, within AO353_22095 at 4839.324 kb on - strand, within AO353_22095 at 4839.324 kb on - strand, within AO353_22095 at 4839.324 kb on - strand, within AO353_22095 at 4839.324 kb on - strand, within AO353_22095 at 4839.324 kb on - strand, within AO353_22095 at 4839.324 kb on - strand, within AO353_22095 at 4839.324 kb on - strand, within AO353_22095 at 4839.329 kb on - strand, within AO353_22095 at 4839.472 kb on + strand, within AO353_22095 at 4839.473 kb on - strand, within AO353_22095
Per-strain Table
Position Strand Gene LocusTag Fraction N1B4wt with N2E3m denitrifying replicate C remove 4,836,197 - AO353_22085 0.28 -1.9 4,836,197 - AO353_22085 0.28 -1.1 4,836,197 - AO353_22085 0.28 -3.8 4,836,357 + AO353_22085 0.40 -1.8 4,836,478 + AO353_22085 0.49 -1.5 4,836,478 + AO353_22085 0.49 -0.9 4,836,479 - AO353_22085 0.49 -2.1 4,836,479 - AO353_22085 0.49 -1.6 4,836,479 - AO353_22085 0.49 -1.9 4,836,479 - AO353_22085 0.49 -1.6 4,836,479 - AO353_22085 0.49 -1.8 4,836,532 + AO353_22085 0.53 -2.1 4,836,532 + AO353_22085 0.53 -1.1 4,836,532 + AO353_22085 0.53 -0.3 4,836,532 + AO353_22085 0.53 -1.5 4,836,532 + AO353_22085 0.53 -0.5 4,836,532 + AO353_22085 0.53 -1.3 4,836,533 - AO353_22085 0.53 -1.6 4,836,533 - AO353_22085 0.53 +0.7 4,836,533 - AO353_22085 0.53 +0.7 4,836,533 - AO353_22085 0.53 -0.3 4,836,535 + AO353_22085 0.54 +1.0 4,836,535 + AO353_22085 0.54 +2.8 4,836,535 + AO353_22085 0.54 -0.9 4,836,536 - AO353_22085 0.54 -1.3 4,836,536 - AO353_22085 0.54 -1.6 4,836,536 - AO353_22085 0.54 -2.5 4,836,536 - AO353_22085 0.54 -0.1 4,836,709 + AO353_22085 0.67 -0.1 4,836,787 - AO353_22085 0.73 -2.1 4,836,847 + AO353_22085 0.77 +1.9 4,836,847 + AO353_22085 0.77 -0.3 4,836,847 + AO353_22085 0.77 +1.0 4,836,847 + AO353_22085 0.77 -2.0 4,836,848 - AO353_22085 0.78 -1.9 4,836,848 - AO353_22085 0.78 -0.9 4,836,994 + AO353_22085 0.89 -0.9 4,836,995 - AO353_22085 0.89 -2.5 4,836,995 - AO353_22085 0.89 -2.3 4,836,995 - AO353_22085 0.89 -1.6 4,836,995 - AO353_22085 0.89 -1.1 4,836,995 - AO353_22085 0.89 -1.6 4,836,995 - AO353_22085 0.89 +0.1 4,837,027 + +0.4 4,837,027 + +1.0 4,837,027 + -1.9 4,837,028 - -2.0 4,837,028 - -2.3 4,837,041 - +1.7 4,837,041 - -1.0 4,837,041 - -1.9 4,837,284 + AO353_22090 0.12 -2.1 4,837,284 + AO353_22090 0.12 -2.8 4,837,385 + AO353_22090 0.19 +1.5 4,837,386 - AO353_22090 0.19 -1.1 4,837,499 + AO353_22090 0.27 -1.3 4,837,500 - AO353_22090 0.27 -2.1 4,837,500 - AO353_22090 0.27 -1.3 4,837,500 - AO353_22090 0.27 -0.7 4,837,512 + AO353_22090 0.28 -0.9 4,837,513 - AO353_22090 0.28 -2.4 4,837,584 - AO353_22090 0.33 -1.6 4,837,603 + AO353_22090 0.35 -1.5 4,837,858 + AO353_22090 0.53 -3.3 4,837,898 + AO353_22090 0.56 +0.7 4,837,898 + AO353_22090 0.56 -2.1 4,837,898 + AO353_22090 0.56 -1.6 4,837,899 - AO353_22090 0.56 -3.7 4,838,022 + AO353_22090 0.65 +0.2 4,838,022 + AO353_22090 0.65 +0.7 4,838,022 + AO353_22090 0.65 +2.7 4,838,023 - AO353_22090 0.65 -0.4 4,838,116 - AO353_22090 0.71 +0.4 4,838,156 + AO353_22090 0.74 +1.2 4,838,157 - AO353_22090 0.74 -2.3 4,838,432 + -1.3 4,838,432 + -0.9 4,838,433 - -2.3 4,838,433 - -1.3 4,838,450 + -0.3 4,838,450 + -0.9 4,838,450 + -1.6 4,838,513 + +2.4 4,838,513 + +0.1 4,838,514 - -2.5 4,838,514 - -0.4 4,838,514 - -3.8 4,838,514 - -1.3 4,838,514 - +1.3 4,838,514 - -0.6 4,838,593 - -1.1 4,838,593 - -1.3 4,838,593 - +0.5 4,838,688 - -0.3 4,838,706 - -0.9 4,838,768 + -0.9 4,838,769 - +0.7 4,838,876 + -0.9 4,838,876 + -2.5 4,838,877 - -0.9 4,838,877 - -1.1 4,838,885 + -1.3 4,838,885 + -2.8 4,838,885 + -0.9 4,838,885 + +0.4 4,838,886 - -3.0 4,838,886 - -0.9 4,838,886 - -1.9 4,838,886 - -0.5 4,838,886 - -2.1 4,838,892 - -0.9 4,838,892 - -1.9 4,838,892 - -0.3 4,838,892 - +0.5 4,839,023 + AO353_22095 0.12 -0.3 4,839,024 - -1.6 4,839,025 + AO353_22095 0.12 -1.6 4,839,025 + AO353_22095 0.12 -2.6 4,839,025 + AO353_22095 0.12 -0.9 4,839,025 + AO353_22095 0.12 -1.6 4,839,026 - AO353_22095 0.12 -1.8 4,839,026 - AO353_22095 0.12 -1.9 4,839,026 - AO353_22095 0.12 -1.1 4,839,026 - AO353_22095 0.12 -1.8 4,839,104 + AO353_22095 0.14 -0.9 4,839,104 + AO353_22095 0.14 -1.9 4,839,104 + AO353_22095 0.14 -1.0 4,839,104 + AO353_22095 0.14 -0.7 4,839,119 + +2.3 4,839,119 + AO353_22095 0.14 -1.8 4,839,119 + AO353_22095 0.14 -1.9 4,839,120 - AO353_22095 0.14 -3.3 4,839,120 - AO353_22095 0.14 -2.6 4,839,176 + AO353_22095 0.16 -1.3 4,839,177 - AO353_22095 0.16 +0.1 4,839,177 - AO353_22095 0.16 +0.9 4,839,177 - AO353_22095 0.16 -0.6 4,839,177 - AO353_22095 0.16 -1.3 4,839,230 + AO353_22095 0.17 -0.9 4,839,240 - AO353_22095 0.17 -0.3 4,839,312 - AO353_22095 0.19 -3.8 4,839,312 - AO353_22095 0.19 -0.7 4,839,312 - AO353_22095 0.19 -2.6 4,839,323 + AO353_22095 0.20 -0.5 4,839,323 + AO353_22095 0.20 -3.5 4,839,323 + AO353_22095 0.20 -1.5 4,839,324 - AO353_22095 0.20 -1.3 4,839,324 - AO353_22095 0.20 -0.9 4,839,324 - AO353_22095 0.20 -2.9 4,839,324 - AO353_22095 0.20 -1.9 4,839,324 - AO353_22095 0.20 -3.1 4,839,324 - AO353_22095 0.20 -0.0 4,839,324 - AO353_22095 0.20 -0.9 4,839,329 - AO353_22095 0.20 -0.9 4,839,472 + AO353_22095 0.24 -0.9 4,839,473 - AO353_22095 0.24 -2.1
Or see this region's nucleotide sequence