Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22090

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
4,836,197	-		AO353_22085	0.28	-1.9
4,836,197	-		AO353_22085	0.28	-1.1
4,836,197	-		AO353_22085	0.28	-3.8
4,836,357	+		AO353_22085	0.40	-1.8
4,836,478	+		AO353_22085	0.49	-1.5
4,836,478	+		AO353_22085	0.49	-0.9
4,836,479	-		AO353_22085	0.49	-2.1
4,836,479	-		AO353_22085	0.49	-1.6
4,836,479	-		AO353_22085	0.49	-1.9
4,836,479	-		AO353_22085	0.49	-1.6
4,836,479	-		AO353_22085	0.49	-1.8
4,836,532	+		AO353_22085	0.53	-2.1
4,836,532	+		AO353_22085	0.53	-1.1
4,836,532	+		AO353_22085	0.53	-0.3
4,836,532	+		AO353_22085	0.53	-1.5
4,836,532	+		AO353_22085	0.53	-0.5
4,836,532	+		AO353_22085	0.53	-1.3
4,836,533	-		AO353_22085	0.53	-1.6
4,836,533	-		AO353_22085	0.53	+0.7
4,836,533	-		AO353_22085	0.53	+0.7
4,836,533	-		AO353_22085	0.53	-0.3
4,836,535	+		AO353_22085	0.54	+1.0
4,836,535	+		AO353_22085	0.54	+2.8
4,836,535	+		AO353_22085	0.54	-0.9
4,836,536	-		AO353_22085	0.54	-1.3
4,836,536	-		AO353_22085	0.54	-1.6
4,836,536	-		AO353_22085	0.54	-2.5
4,836,536	-		AO353_22085	0.54	-0.1
4,836,709	+		AO353_22085	0.67	-0.1
4,836,787	-		AO353_22085	0.73	-2.1
4,836,847	+		AO353_22085	0.77	+1.9
4,836,847	+		AO353_22085	0.77	-0.3
4,836,847	+		AO353_22085	0.77	+1.0
4,836,847	+		AO353_22085	0.77	-2.0
4,836,848	-		AO353_22085	0.78	-1.9
4,836,848	-		AO353_22085	0.78	-0.9
4,836,994	+		AO353_22085	0.89	-0.9
4,836,995	-		AO353_22085	0.89	-2.5
4,836,995	-		AO353_22085	0.89	-2.3
4,836,995	-		AO353_22085	0.89	-1.6
4,836,995	-		AO353_22085	0.89	-1.1
4,836,995	-		AO353_22085	0.89	-1.6
4,836,995	-		AO353_22085	0.89	+0.1
4,837,027	+				+0.4
4,837,027	+				+1.0
4,837,027	+				-1.9
4,837,028	-				-2.0
4,837,028	-				-2.3
4,837,041	-				+1.7
4,837,041	-				-1.0
4,837,041	-				-1.9
4,837,284	+		AO353_22090	0.12	-2.1
4,837,284	+		AO353_22090	0.12	-2.8
4,837,385	+		AO353_22090	0.19	+1.5
4,837,386	-		AO353_22090	0.19	-1.1
4,837,499	+		AO353_22090	0.27	-1.3
4,837,500	-		AO353_22090	0.27	-2.1
4,837,500	-		AO353_22090	0.27	-1.3
4,837,500	-		AO353_22090	0.27	-0.7
4,837,512	+		AO353_22090	0.28	-0.9
4,837,513	-		AO353_22090	0.28	-2.4
4,837,584	-		AO353_22090	0.33	-1.6
4,837,603	+		AO353_22090	0.35	-1.5
4,837,858	+		AO353_22090	0.53	-3.3
4,837,898	+		AO353_22090	0.56	+0.7
4,837,898	+		AO353_22090	0.56	-2.1
4,837,898	+		AO353_22090	0.56	-1.6
4,837,899	-		AO353_22090	0.56	-3.7
4,838,022	+		AO353_22090	0.65	+0.2
4,838,022	+		AO353_22090	0.65	+0.7
4,838,022	+		AO353_22090	0.65	+2.7
4,838,023	-		AO353_22090	0.65	-0.4
4,838,116	-		AO353_22090	0.71	+0.4
4,838,156	+		AO353_22090	0.74	+1.2
4,838,157	-		AO353_22090	0.74	-2.3
4,838,432	+				-1.3
4,838,432	+				-0.9
4,838,433	-				-2.3
4,838,433	-				-1.3
4,838,450	+				-0.3
4,838,450	+				-0.9
4,838,450	+				-1.6
4,838,513	+				+2.4
4,838,513	+				+0.1
4,838,514	-				-2.5
4,838,514	-				-0.4
4,838,514	-				-3.8
4,838,514	-				-1.3
4,838,514	-				+1.3
4,838,514	-				-0.6
4,838,593	-				-1.1
4,838,593	-				-1.3
4,838,593	-				+0.5
4,838,688	-				-0.3
4,838,706	-				-0.9
4,838,768	+				-0.9
4,838,769	-				+0.7
4,838,876	+				-0.9
4,838,876	+				-2.5
4,838,877	-				-0.9
4,838,877	-				-1.1
4,838,885	+				-1.3
4,838,885	+				-2.8
4,838,885	+				-0.9
4,838,885	+				+0.4
4,838,886	-				-3.0
4,838,886	-				-0.9
4,838,886	-				-1.9
4,838,886	-				-0.5
4,838,886	-				-2.1
4,838,892	-				-0.9
4,838,892	-				-1.9
4,838,892	-				-0.3
4,838,892	-				+0.5
4,839,023	+		AO353_22095	0.12	-0.3
4,839,024	-				-1.6
4,839,025	+		AO353_22095	0.12	-1.6
4,839,025	+		AO353_22095	0.12	-2.6
4,839,025	+		AO353_22095	0.12	-0.9
4,839,025	+		AO353_22095	0.12	-1.6
4,839,026	-		AO353_22095	0.12	-1.8
4,839,026	-		AO353_22095	0.12	-1.9
4,839,026	-		AO353_22095	0.12	-1.1
4,839,026	-		AO353_22095	0.12	-1.8
4,839,104	+		AO353_22095	0.14	-0.9
4,839,104	+		AO353_22095	0.14	-1.9
4,839,104	+		AO353_22095	0.14	-1.0
4,839,104	+		AO353_22095	0.14	-0.7
4,839,119	+				+2.3
4,839,119	+		AO353_22095	0.14	-1.8
4,839,119	+		AO353_22095	0.14	-1.9
4,839,120	-		AO353_22095	0.14	-3.3
4,839,120	-		AO353_22095	0.14	-2.6
4,839,176	+		AO353_22095	0.16	-1.3
4,839,177	-		AO353_22095	0.16	+0.1
4,839,177	-		AO353_22095	0.16	+0.9
4,839,177	-		AO353_22095	0.16	-0.6
4,839,177	-		AO353_22095	0.16	-1.3
4,839,230	+		AO353_22095	0.17	-0.9
4,839,240	-		AO353_22095	0.17	-0.3
4,839,312	-		AO353_22095	0.19	-3.8
4,839,312	-		AO353_22095	0.19	-0.7
4,839,312	-		AO353_22095	0.19	-2.6
4,839,323	+		AO353_22095	0.20	-0.5
4,839,323	+		AO353_22095	0.20	-3.5
4,839,323	+		AO353_22095	0.20	-1.5
4,839,324	-		AO353_22095	0.20	-1.3
4,839,324	-		AO353_22095	0.20	-0.9
4,839,324	-		AO353_22095	0.20	-2.9
4,839,324	-		AO353_22095	0.20	-1.9
4,839,324	-		AO353_22095	0.20	-3.1
4,839,324	-		AO353_22095	0.20	-0.0
4,839,324	-		AO353_22095	0.20	-0.9
4,839,329	-		AO353_22095	0.20	-0.9
4,839,472	+		AO353_22095	0.24	-0.9
4,839,473	-		AO353_22095	0.24	-2.1