Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22080

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
4,832,808	+		AO353_22070	0.72	-0.3
4,832,973	-				-0.3
4,832,981	-				-0.6
4,833,003	+				-0.5
4,833,021	+				+1.7
4,833,021	+				-1.2
4,833,021	+				-0.3
4,833,021	+				-1.5
4,833,021	+				+1.7
4,833,021	+				-2.5
4,833,021	+				-1.6
4,833,022	-				+2.9
4,833,022	-				+0.7
4,833,022	-				+2.3
4,833,022	-				-0.9
4,833,024	+				-1.9
4,833,024	+				-1.6
4,833,024	+				-0.3
4,833,024	+				-0.9
4,833,024	+				-1.9
4,833,025	-				-0.3
4,833,025	-				+1.8
4,833,025	-				+1.9
4,833,025	-				+2.3
4,833,047	+				+0.1
4,833,047	+				+0.1
4,833,047	+				+0.3
4,833,047	+				+1.1
4,833,047	+				-0.1
4,833,047	+				-1.3
4,833,047	+				-1.2
4,833,048	-				-1.2
4,833,048	-				+0.1
4,833,048	-				+2.1
4,833,048	-				-1.8
4,833,048	-				-1.6
4,833,048	-				-0.1
4,833,048	-				+0.3
4,833,048	-				+0.7
4,833,048	-				+1.9
4,833,048	-				+0.7
4,833,048	-				-0.1
4,833,048	-				+1.4
4,833,064	-				-1.6
4,833,064	-				+1.7
4,833,153	+		AO353_22075	0.10	-1.6
4,833,153	+		AO353_22075	0.10	+0.7
4,833,377	+		AO353_22075	0.45	-2.6
4,833,378	-		AO353_22075	0.45	-1.4
4,833,378	-		AO353_22075	0.45	-2.3
4,833,378	-		AO353_22075	0.45	-2.8
4,833,416	+		AO353_22075	0.51	-0.9
4,833,417	-		AO353_22075	0.51	-2.1
4,833,497	+		AO353_22075	0.64	-2.1
4,833,497	+		AO353_22075	0.64	-1.3
4,833,498	-		AO353_22075	0.64	-2.8
4,833,498	-		AO353_22075	0.64	-1.3
4,833,498	-		AO353_22075	0.64	-2.9
4,833,511	+		AO353_22075	0.66	+0.3
4,833,697	+				-1.4
4,833,697	+				-0.3
4,833,740	+				-1.3
4,833,740	+				+0.4
4,833,741	-				+0.1
4,833,816	+				-1.9
4,833,816	+				-1.9
4,833,816	+				-0.7
4,833,817	-				+0.7
4,833,960	+		AO353_22080	0.13	+0.4
4,833,960	+		AO353_22080	0.13	-0.7
4,834,306	+		AO353_22080	0.32	-1.8
4,834,626	+		AO353_22080	0.50	-2.3
4,834,626	+		AO353_22080	0.50	-3.2
4,834,626	+		AO353_22080	0.50	-3.0
4,834,659	+		AO353_22080	0.52	-2.2
4,834,659	+		AO353_22080	0.52	-2.3
4,834,659	+		AO353_22080	0.52	-2.3
4,834,659	+		AO353_22080	0.52	-2.4
4,834,660	-		AO353_22080	0.52	-0.3
4,834,768	+		AO353_22080	0.58	-0.5
4,834,769	-		AO353_22080	0.58	+1.3
4,835,008	+		AO353_22080	0.71	-0.3
4,835,008	+		AO353_22080	0.71	-1.6
4,835,008	+		AO353_22080	0.71	+0.7
4,835,008	+		AO353_22080	0.71	-0.9
4,835,009	-		AO353_22080	0.71	-2.3
4,835,009	-		AO353_22080	0.71	-2.9
4,835,009	-		AO353_22080	0.71	+0.7
4,835,009	-		AO353_22080	0.71	-0.5
4,835,010	+		AO353_22080	0.71	-2.3
4,835,010	+		AO353_22080	0.71	-3.3
4,835,010	+		AO353_22080	0.71	-2.2
4,835,010	+		AO353_22080	0.71	-0.3
4,835,010	+		AO353_22080	0.71	-1.3
4,835,010	+		AO353_22080	0.71	-1.8
4,835,010	+		AO353_22080	0.71	-1.3
4,835,010	+		AO353_22080	0.71	-3.2
4,835,010	+		AO353_22080	0.71	-3.5
4,835,010	+		AO353_22080	0.71	-2.1
4,835,010	+		AO353_22080	0.71	-2.1
4,835,010	+		AO353_22080	0.71	-2.3
4,835,010	+		AO353_22080	0.71	-3.1
4,835,011	-		AO353_22080	0.71	-0.1
4,835,011	-		AO353_22080	0.71	+0.7
4,835,011	-		AO353_22080	0.71	-0.3
4,835,011	-		AO353_22080	0.71	+0.7
4,835,036	+		AO353_22080	0.72	-2.3
4,835,036	+		AO353_22080	0.72	-1.6
4,835,191	-		AO353_22080	0.81	-0.6
4,835,224	+		AO353_22080	0.83	-2.3
4,835,224	+		AO353_22080	0.83	-3.1
4,835,225	-		AO353_22080	0.83	-1.6
4,835,225	-		AO353_22080	0.83	-1.6
4,835,365	+				-2.9
4,835,365	+				-1.8
4,835,365	+				-1.6
4,835,365	+				+0.1
4,835,365	+				-0.3
4,835,365	+				-2.9
4,835,365	+				-2.8
4,835,366	-				+0.9
4,835,366	-				+3.0
4,835,569	+				-0.3
4,835,569	+				-0.3
4,835,570	-				-1.3
4,835,619	+				-1.7
4,835,620	-				-2.3
4,835,670	-				-2.6
4,835,685	-				-1.2
4,835,685	-				-1.3
4,835,710	+				-2.6
4,835,710	+				-1.3
4,835,724	+				-0.3
4,835,724	+				-2.3
4,835,800	+				+0.4
4,835,801	-				-0.4
4,835,801	-				-2.1
4,835,801	-				-0.3
4,835,880	+				-1.1
4,835,880	+				-0.9
4,835,880	+				-3.5
4,835,880	+				-0.9
4,835,880	+				-1.6
4,835,880	+				-1.1
4,835,880	+				+0.7
4,835,880	+				-0.5
4,835,880	+				+1.7
4,835,881	-				-3.3
4,835,881	-				-3.2
4,835,881	-				-2.5
4,835,881	-				-2.1
4,836,104	-		AO353_22085	0.21	+0.3
4,836,104	-		AO353_22085	0.21	-0.9
4,836,104	-		AO353_22085	0.21	-2.1
4,836,197	-		AO353_22085	0.28	-1.9
4,836,197	-		AO353_22085	0.28	-1.1
4,836,197	-		AO353_22085	0.28	-3.8
4,836,357	+		AO353_22085	0.40	-1.8
4,836,478	+		AO353_22085	0.49	-1.5
4,836,478	+		AO353_22085	0.49	-0.9
4,836,479	-		AO353_22085	0.49	-2.1
4,836,479	-		AO353_22085	0.49	-1.6
4,836,479	-		AO353_22085	0.49	-1.9
4,836,479	-		AO353_22085	0.49	-1.6
4,836,479	-		AO353_22085	0.49	-1.8