Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20540

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
4,505,555	+				+0.0
4,505,556	-				-1.2
4,505,688	+				+1.1
4,505,689	-				-0.7
4,505,689	-				-1.2
4,505,689	-				+0.7
4,505,743	-				-1.0
4,505,743	-				-1.2
4,505,743	-				-1.4
4,505,799	+				-1.7
4,505,799	+				+0.3
4,505,799	+				+0.3
4,505,799	+				-0.2
4,505,800	-				+0.1
4,505,800	-				-0.3
4,505,980	+		AO353_20530	0.77	+0.1
4,505,980	+		AO353_20530	0.77	+0.5
4,505,980	+		AO353_20530	0.77	-0.3
4,505,980	+		AO353_20530	0.77	-1.7
4,505,980	+		AO353_20530	0.77	+0.3
4,505,980	+		AO353_20530	0.77	+0.1
4,505,980	+		AO353_20530	0.77	+0.7
4,505,980	+		AO353_20530	0.77	+2.4
4,505,981	-		AO353_20530	0.77	-0.2
4,505,981	-		AO353_20530	0.77	+1.3
4,505,981	-		AO353_20530	0.77	-2.0
4,505,981	-		AO353_20530	0.77	+0.3
4,505,981	-		AO353_20530	0.77	-0.7
4,505,981	-		AO353_20530	0.77	-1.0
4,505,989	+		AO353_20530	0.81	-0.2
4,505,990	-		AO353_20530	0.81	-0.4
4,505,990	-		AO353_20530	0.81	-0.6
4,506,081	-		AO353_20535	0.20	-0.6
4,506,081	-		AO353_20535	0.20	-1.0
4,506,133	+		AO353_20535	0.44	-2.0
4,506,133	+		AO353_20535	0.44	-0.8
4,506,133	+		AO353_20535	0.44	-2.0
4,506,134	-		AO353_20535	0.45	+0.1
4,506,134	-		AO353_20535	0.45	+0.4
4,506,134	-		AO353_20535	0.45	+0.8
4,506,232	+				+0.4
4,506,232	+				-2.8
4,506,233	-				-0.2
4,506,233	-				-0.2
4,506,233	-				+0.1
4,506,233	-				+0.4
4,506,249	+				+0.2
4,506,249	+				-1.3
4,506,249	+				+1.2
4,506,249	+				-1.6
4,506,262	+				-0.3
4,506,263	-				+0.1
4,506,263	-				+0.2
4,506,263	-				-1.6
4,506,289	+				-1.8
4,506,289	+				-2.0
4,506,289	+				+0.4
4,506,290	-				-0.6
4,506,290	-				-1.3
4,506,290	-				-2.2
4,506,302	-				-1.5
4,506,302	-				+0.9
4,506,302	-				-0.9
4,506,359	+				-0.2
4,506,359	-				+0.8
4,506,360	-				+1.6
4,506,360	-				+1.6
4,506,360	-				-1.2
4,506,360	-				+0.6
4,506,360	-				-0.9
4,506,360	-				-0.2
4,506,360	-				-0.5
4,506,367	+				+0.5
4,506,368	-				+0.9
4,506,395	+				-0.8
4,506,395	+				-0.2
4,506,442	+				+0.7
4,506,458	+				+1.0
4,506,458	+				-0.2
4,506,458	+				-1.6
4,506,458	+				-1.2
4,506,458	+				+1.2
4,506,458	+				-0.8
4,506,458	+				-0.3
4,506,459	-				-0.6
4,506,459	-				-0.8
4,506,459	-				-0.8
4,506,459	-				+0.3
4,506,459	-				-1.2
4,506,459	-				-0.5
4,506,487	+				-1.5
4,506,487	+				-1.8
4,506,487	+				-0.9
4,506,487	+				-2.0
4,506,487	+				-3.2
4,506,488	-				-1.9
4,506,488	-				-0.8
4,506,488	-				-2.8
4,506,488	-				-1.8
4,506,545	+				-1.1
4,506,545	+				+0.8
4,506,545	+				+0.4
4,506,545	+				+0.1
4,506,545	+				-0.3
4,506,545	+				+0.8
4,506,545	+				-0.2
4,506,545	+				-2.5
4,506,545	+				-2.3
4,506,545	+				-1.8
4,506,545	+				-0.9
4,506,546	-				-1.3
4,506,546	-				-2.8
4,506,546	-				-2.2
4,506,546	-				+0.5
4,506,546	-				-0.5
4,506,546	-				-1.6
4,506,546	-				-0.3
4,506,800	+		AO353_20540	0.29	-1.6
4,506,800	+		AO353_20540	0.29	+0.4
4,506,800	+		AO353_20540	0.29	+0.1
4,506,800	+		AO353_20540	0.29	-0.7
4,506,800	+		AO353_20540	0.29	-2.0
4,506,800	+		AO353_20540	0.29	+1.4
4,506,801	-		AO353_20540	0.29	-3.3
4,506,801	-		AO353_20540	0.29	-1.1
4,506,896	+		AO353_20540	0.37	-1.5
4,507,007	+				-0.2
4,507,007	+		AO353_20540	0.46	-3.2
4,507,007	+		AO353_20540	0.46	-2.3
4,507,057	+		AO353_20540	0.50	-1.1
4,507,057	+		AO353_20540	0.50	-1.9
4,507,058	-		AO353_20540	0.50	-2.0
4,507,058	-		AO353_20540	0.50	-1.2
4,507,058	-		AO353_20540	0.50	-0.0
4,507,058	-		AO353_20540	0.50	-1.0
4,507,058	-		AO353_20540	0.50	+1.3
4,507,058	-				-0.2
4,507,058	-		AO353_20540	0.50	-1.6
4,507,199	+		AO353_20540	0.62	-3.0
4,507,199	+		AO353_20540	0.62	-1.0
4,507,199	+		AO353_20540	0.62	+0.3
4,507,200	-		AO353_20540	0.62	-0.6
4,507,208	+		AO353_20540	0.63	-1.7
4,507,208	+		AO353_20540	0.63	-0.8
4,507,208	+		AO353_20540	0.63	-1.1
4,507,209	-		AO353_20540	0.63	-2.0
4,507,209	-		AO353_20540	0.63	+0.1
4,507,427	+		AO353_20540	0.81	-1.2
4,507,542	-				-0.3
4,507,566	+				-1.5
4,507,566	+				-0.5
4,507,566	+				+1.3
4,507,567	-				-1.0
4,507,567	-				-0.2
4,507,655	-				-2.1
4,507,692	-				-0.7
4,507,712	+				-1.5
4,507,712	+				-0.5
4,507,712	+				+0.7
4,507,713	-				-0.2
4,507,713	-				+1.4
4,507,713	-				-0.2
4,507,713	-				-0.7
4,507,736	+				-1.2
4,507,736	+				-1.5
4,507,736	+				-0.3
4,507,736	+				-0.7
4,507,736	+				-2.2
4,507,736	+				+0.0
4,507,736	+				-1.5
4,507,736	+				+0.3
4,507,737	-				+1.3
4,507,737	-				-2.2
4,507,737	-				-0.6
4,507,737	-				-0.2
4,507,737	-				+0.3
4,507,737	-				+1.4
4,507,737	-				-1.1
4,507,737	-				-0.3
4,507,737	-				+1.3
4,507,739	+				+0.3
4,507,739	+				-1.6
4,507,739	+				-2.3
4,507,739	+				+0.3
4,507,739	+				-0.2
4,507,739	+				+0.4
4,507,739	+				-0.7
4,507,740	-				+0.8
4,507,740	-				+1.2
4,507,740	-				-1.0
4,507,740	-				+0.4
4,507,740	-				+1.3
4,507,740	-				-1.7
4,507,740	-				+0.3
4,507,741	+				-1.3
4,507,741	+				+0.0
4,507,741	+				+0.4
4,507,741	+				-1.2
4,507,742	-				-0.2
4,507,742	-				+0.1
4,507,742	-				-0.5
4,507,742	-				-1.3
4,507,742	-				+0.6
4,507,822	+				+0.7
4,507,823	-				+4.0
4,507,823	-				+0.6
4,507,823	-				+3.4
4,507,842	-				+0.3
4,507,851	+				+0.1
4,507,852	-				-0.2
4,507,852	-				-0.9
4,507,872	-				-1.3
4,507,872	-				+0.8
4,507,872	-				-1.0
4,507,878	-				-0.7
4,507,899	+				+0.4
4,507,994	-				+0.6
4,507,994	-				-1.7
4,507,997	+				+0.8
4,507,997	+				-0.4
4,507,997	+				+0.3
4,507,997	+				-0.2
4,507,997	+				-3.0
4,507,998	-				-0.7
4,507,998	-				+0.8
4,507,998	-				+1.1
4,507,998	-				+1.2
4,507,998	-				-0.5
4,508,002	+				+0.0
4,508,002	+				+0.7
4,508,002	+				+0.7
4,508,002	+				+1.8
4,508,003	-				-0.5
4,508,003	-				-0.3
4,508,003	-				+0.5
4,508,003	-				-0.9
4,508,003	-				+0.8
4,508,003	-				-0.3
4,508,003	-				-0.3
4,508,003	-				+1.8
4,508,019	+				+0.1
4,508,019	+				-0.2
4,508,019	+				+1.3
4,508,019	+				-2.0
4,508,019	+				+0.4
4,508,019	+				-2.0
4,508,020	-				-2.3
4,508,219	+		AO353_20545	0.11	-0.9
4,508,219	+		AO353_20545	0.11	+0.8
4,508,220	-		AO353_20545	0.11	+0.4
4,508,220	-		AO353_20545	0.11	-2.2
4,508,261	+		AO353_20545	0.13	+0.5
4,508,261	+		AO353_20545	0.13	-0.3
4,508,262	-		AO353_20545	0.13	-0.1
4,508,262	-		AO353_20545	0.13	-0.2
4,508,262	-		AO353_20545	0.13	+0.3
4,508,262	-		AO353_20545	0.13	+0.4
4,508,262	-		AO353_20545	0.13	+0.9
4,508,262	-		AO353_20545	0.13	-0.5
4,508,262	-		AO353_20545	0.13	-1.0
4,508,262	-		AO353_20545	0.13	-2.6
4,508,274	-		AO353_20545	0.13	-0.2
4,508,274	-		AO353_20545	0.13	-1.3
4,508,274	-		AO353_20545	0.13	-0.5
4,508,274	-		AO353_20545	0.13	+1.6
4,508,274	-		AO353_20545	0.13	+0.8
4,508,276	+		AO353_20545	0.14	+0.1
4,508,276	+		AO353_20545	0.14	-2.2
4,508,277	-		AO353_20545	0.14	-1.2
4,508,277	-		AO353_20545	0.14	-3.3
4,508,277	-		AO353_20545	0.14	-0.5
4,508,277	-		AO353_20545	0.14	-0.2
4,508,277	-		AO353_20545	0.14	-0.4
4,508,277	-		AO353_20545	0.14	-1.8
4,508,277	-		AO353_20545	0.14	+0.3
4,508,282	+		AO353_20545	0.14	+0.2
4,508,282	+		AO353_20545	0.14	-1.5
4,508,282	+				-0.2
4,508,282	+		AO353_20545	0.14	+0.6
4,508,282	+		AO353_20545	0.14	+0.1
4,508,283	-		AO353_20545	0.14	+1.2
4,508,283	-		AO353_20545	0.14	+0.2
4,508,285	+		AO353_20545	0.14	+0.2
4,508,285	+		AO353_20545	0.14	-0.6
4,508,286	-		AO353_20545	0.14	+0.8
4,508,286	-		AO353_20545	0.14	-0.2
4,508,300	+		AO353_20545	0.15	-0.0
4,508,301	-		AO353_20545	0.15	+0.2
4,508,301	-		AO353_20545	0.15	-0.9
4,508,301	-		AO353_20545	0.15	+0.8
4,508,301	-		AO353_20545	0.15	-0.8
4,508,301	-		AO353_20545	0.15	-0.8
4,508,435	+		AO353_20545	0.21	-1.2
4,508,435	+		AO353_20545	0.21	-0.2
4,508,435	+		AO353_20545	0.21	-1.0
4,508,436	-		AO353_20545	0.21	+1.6
4,508,459	+		AO353_20545	0.23	-1.8
4,508,459	+		AO353_20545	0.23	-0.4
4,508,459	+		AO353_20545	0.23	+1.3
4,508,460	-		AO353_20545	0.23	+0.3
4,508,540	+		AO353_20545	0.27	+2.4
4,508,540	+		AO353_20545	0.27	-1.1
4,508,540	+		AO353_20545	0.27	-0.5
4,508,540	+		AO353_20545	0.27	+1.6
4,508,540	+		AO353_20545	0.27	+2.0
4,508,541	-		AO353_20545	0.27	+1.2
4,508,541	-		AO353_20545	0.27	-0.5
4,508,541	-		AO353_20545	0.27	-1.2
4,508,541	-		AO353_20545	0.27	+0.3
4,508,541	-		AO353_20545	0.27	+0.1
4,508,541	-		AO353_20545	0.27	+1.0
4,508,541	-		AO353_20545	0.27	-1.5
4,508,541	-		AO353_20545	0.27	+0.8
4,508,541	-		AO353_20545	0.27	-1.3
4,508,603	-		AO353_20545	0.30	-0.4