Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20100

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
4,420,662	+		AO353_20095	0.59	-1.5
4,420,780	-		AO353_20095	0.68	-0.7
4,420,990	-		AO353_20095	0.84	-1.6
4,421,214	+				+0.6
4,421,215	-				-0.5
4,421,215	-				-0.7
4,421,215	-				-0.7
4,421,215	-				+0.9
4,421,270	+				-0.6
4,421,270	+				+0.3
4,421,271	-				-0.1
4,421,271	-				+1.2
4,421,271	-				-0.9
4,421,271	-				+1.4
4,421,271	-				-1.1
4,421,271	-				+0.9
4,421,271	-				+0.9
4,421,273	-				-0.5
4,421,273	-				+1.4
4,421,273	-				+0.5
4,421,290	-				+1.7
4,421,314	+				+0.6
4,421,315	-				+0.5
4,421,315	-				-0.7
4,421,315	-				+0.1
4,421,331	+				+0.1
4,421,331	+				+0.2
4,421,331	+				-1.1
4,421,331	+				-1.9
4,421,331	+				+1.9
4,421,331	+				-2.5
4,421,331	+				-0.1
4,421,331	+				+0.2
4,421,331	+				+0.5
4,421,331	+				-1.0
4,421,331	+				-0.3
4,421,331	+				+0.6
4,421,332	-				+0.5
4,421,332	-				+0.1
4,421,332	-				-0.7
4,421,332	-				-0.3
4,421,332	-				-2.6
4,421,332	-				-1.9
4,421,341	+				-1.1
4,421,342	-				-1.5
4,421,465	-		AO353_20100	0.27	-0.1
4,421,560	+		AO353_20100	0.46	+0.4
4,421,561	-		AO353_20100	0.46	+0.3
4,421,664	+		AO353_20100	0.66	-1.0
4,421,722	+		AO353_20100	0.78	-0.0
4,421,722	+		AO353_20100	0.78	-0.7
4,421,722	+		AO353_20100	0.78	-2.2
4,421,722	+		AO353_20100	0.78	+1.1
4,421,722	+		AO353_20100	0.78	+0.4
4,421,722	+		AO353_20100	0.78	+1.9
4,421,723	-		AO353_20100	0.78	+0.9
4,421,723	-		AO353_20100	0.78	+0.4
4,421,723	-		AO353_20100	0.78	+0.9
4,421,723	-		AO353_20100	0.78	+1.4
4,421,723	-		AO353_20100	0.78	-3.3
4,421,734	+		AO353_20100	0.80	+1.7
4,421,734	+		AO353_20100	0.80	-0.6
4,421,818	+				-0.1
4,421,818	+				-0.7
4,421,818	+				+0.5
4,421,818	+				+0.7
4,421,819	-				-1.1
4,421,819	-				+0.1
4,421,819	-				+0.0
4,421,834	-				+0.6
4,421,836	+				-0.7
4,421,852	-				+1.7
4,421,852	-				-0.5
4,421,886	+				-0.7
4,421,886	+				-0.7
4,421,887	-				+1.2
4,421,887	-				-0.8
4,421,914	-				+1.0
4,421,973	+				+1.2
4,421,974	-				-0.1
4,421,974	-				-0.1
4,422,296	+		AO353_20105	0.30	-0.4
4,422,296	+		AO353_20105	0.30	-0.1
4,422,296	+		AO353_20105	0.30	-1.1
4,422,297	-		AO353_20105	0.30	+0.0
4,422,297	-		AO353_20105	0.30	-1.1
4,422,297	-		AO353_20105	0.30	+0.7
4,422,297	-		AO353_20105	0.30	+1.9
4,422,443	+		AO353_20105	0.42	-1.4
4,422,443	+		AO353_20105	0.42	+0.9
4,422,496	+		AO353_20105	0.46	+0.5
4,422,497	-		AO353_20105	0.47	-0.3
4,422,497	-		AO353_20105	0.47	+1.2
4,422,640	+		AO353_20105	0.58	-0.1
4,422,641	-		AO353_20105	0.58	+1.4
4,422,705	+		AO353_20105	0.63	+0.3