Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20080

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
4,415,384	+				+0.4
4,415,385	-				+0.9
4,415,454	+				+0.9
4,415,481	+				+0.9
4,415,481	+				+0.3
4,415,481	+				-0.1
4,415,481	+				+0.6
4,415,481	+				-1.6
4,415,481	+				+0.0
4,415,482	-				+0.3
4,415,482	-				-1.1
4,415,482	-				+1.3
4,415,482	-				+0.1
4,415,482	-				-1.3
4,415,482	-				-1.0
4,415,482	-				-0.9
4,415,482	-				-0.7
4,415,482	-				+0.1
4,415,482	-				+0.1
4,415,482	-				+1.9
4,415,482	-				+0.9
4,415,651	+		AO353_20075	0.25	+1.0
4,415,651	+		AO353_20075	0.25	+0.9
4,415,651	+		AO353_20075	0.25	-0.1
4,415,652	-		AO353_20075	0.25	-2.5
4,415,652	-		AO353_20075	0.25	-0.5
4,415,652	-		AO353_20075	0.25	-0.3
4,415,838	+		AO353_20075	0.44	-0.1
4,415,845	+		AO353_20075	0.45	-1.6
4,415,845	+		AO353_20075	0.45	-0.1
4,415,845	+		AO353_20075	0.45	+0.9
4,415,845	+		AO353_20075	0.45	+1.3
4,415,845	+		AO353_20075	0.45	-0.5
4,415,846	-		AO353_20075	0.45	+0.6
4,415,846	-		AO353_20075	0.45	+0.1
4,415,846	-		AO353_20075	0.45	-1.5
4,415,846	-		AO353_20075	0.45	-0.8
4,415,846	-		AO353_20075	0.45	+0.4
4,415,916	+		AO353_20075	0.52	+0.4
4,415,916	+		AO353_20075	0.52	-1.0
4,415,917	-		AO353_20075	0.53	-2.1
4,415,917	-		AO353_20075	0.53	+0.5
4,415,917	-		AO353_20075	0.53	+2.4
4,415,917	-		AO353_20075	0.53	-0.2
4,415,917	-		AO353_20075	0.53	-0.5
4,415,917	-		AO353_20075	0.53	+0.9
4,415,917	-		AO353_20075	0.53	+0.9
4,415,928	-		AO353_20075	0.54	+0.9
4,416,020	+		AO353_20075	0.63	+0.5
4,416,021	-		AO353_20075	0.63	-0.9
4,416,319	+				-1.8
4,416,350	+				+0.0
4,416,350	+				-0.4
4,416,350	+				+0.9
4,416,351	-				+2.1
4,416,351	-				-0.1
4,416,353	-				-0.6
4,416,368	+				-0.5
4,416,368	+				-0.6
4,416,368	+				-1.0
4,416,369	-				+2.0
4,416,369	-				-0.5
4,416,369	-				-0.1
4,416,490	+				+0.1
4,416,490	+				+1.4
4,416,490	+				+0.9
4,416,490	+				-0.8
4,416,491	-				-1.1
4,416,491	-				+1.4
4,416,491	-				-0.1
4,416,491	-				+0.5
4,416,557	+				+1.9
4,416,557	+				+1.3
4,416,557	+				+1.3
4,416,557	+				+0.6
4,416,557	+				+0.7
4,416,557	+				-0.1
4,416,558	-				-0.7
4,416,558	-				+0.5
4,416,558	-				-0.4
4,416,558	-				-1.3
4,416,558	-				+0.2
4,416,558	-				-0.3
4,416,558	-				+0.0
4,416,558	-				-1.8
4,416,641	+		AO353_20080	0.12	+0.9
4,416,641	+		AO353_20080	0.12	+2.4
4,416,642	-		AO353_20080	0.13	-1.2
4,416,677	+		AO353_20080	0.14	-0.5
4,416,677	+		AO353_20080	0.14	+0.3
4,416,677	+		AO353_20080	0.14	+0.2
4,416,677	+		AO353_20080	0.14	+0.4
4,416,805	+		AO353_20080	0.20	-1.1
4,416,805	+		AO353_20080	0.20	-0.2
4,416,805	+		AO353_20080	0.20	-1.1
4,416,805	+		AO353_20080	0.20	-1.1
4,416,805	+		AO353_20080	0.20	+0.4
4,416,806	-		AO353_20080	0.20	-1.1
4,416,806	-		AO353_20080	0.20	-1.0
4,416,806	-		AO353_20080	0.20	+0.5
4,416,806	-		AO353_20080	0.20	-3.1
4,416,806	-		AO353_20080	0.20	-0.5
4,416,877	-		AO353_20080	0.23	-1.7
4,416,926	+		AO353_20080	0.25	+1.9
4,416,929	+		AO353_20080	0.25	+1.2
4,416,930	-		AO353_20080	0.25	-1.9
4,416,992	-		AO353_20080	0.28	+0.6
4,417,000	-		AO353_20080	0.29	-0.2
4,417,091	+		AO353_20080	0.33	+0.4
4,417,092	-		AO353_20080	0.33	+0.0
4,417,147	+		AO353_20080	0.35	-0.1
4,417,147	+		AO353_20080	0.35	+0.3
4,417,147	+		AO353_20080	0.35	-2.5
4,417,148	-		AO353_20080	0.35	-2.1
4,417,148	-		AO353_20080	0.35	-2.6
4,417,148	-		AO353_20080	0.35	-1.1
4,417,357	+		AO353_20080	0.45	+0.9
4,417,357	+		AO353_20080	0.45	-0.1
4,417,357	+		AO353_20080	0.45	-0.5
4,417,492	-		AO353_20080	0.51	-0.1
4,417,745	+		AO353_20080	0.62	-1.7
4,417,745	+		AO353_20080	0.62	-0.7
4,417,745	+		AO353_20080	0.62	-2.7
4,417,746	-		AO353_20080	0.62	+0.2
4,417,746	-		AO353_20080	0.62	-0.5
4,417,746	-		AO353_20080	0.62	+2.2
4,417,746	-		AO353_20080	0.62	-0.1
4,417,758	-		AO353_20080	0.63	+0.1
4,417,764	+		AO353_20080	0.63	+0.4
4,417,764	+		AO353_20080	0.63	+0.1
4,417,764	+		AO353_20080	0.63	-1.1
4,417,764	+		AO353_20080	0.63	+0.9
4,417,764	+				+0.9
4,417,764	+		AO353_20080	0.63	-1.0
4,417,764	+		AO353_20080	0.63	-0.2
4,417,765	-		AO353_20080	0.63	-1.9
4,417,787	+		AO353_20080	0.64	-1.1
4,417,787	+		AO353_20080	0.64	+0.4
4,417,787	+		AO353_20080	0.64	+1.4
4,417,787	+		AO353_20080	0.64	+0.1
4,417,787	+		AO353_20080	0.64	-2.1
4,417,787	+		AO353_20080	0.64	+0.9
4,417,788	-		AO353_20080	0.64	-0.0
4,417,788	-		AO353_20080	0.64	-0.1
4,417,820	+		AO353_20080	0.65	-2.3
4,417,820	+		AO353_20080	0.65	+0.1
4,417,820	+		AO353_20080	0.65	-0.5
4,417,821	-		AO353_20080	0.66	-1.3
4,417,839	+		AO353_20080	0.66	-1.1
4,417,840	-		AO353_20080	0.66	+0.4
4,418,030	+		AO353_20080	0.75	-1.5
4,418,030	+		AO353_20080	0.75	+0.5
4,418,030	+		AO353_20080	0.75	-0.5
4,418,030	+		AO353_20080	0.75	-2.3
4,418,030	+		AO353_20080	0.75	-0.4
4,418,030	+		AO353_20080	0.75	+0.9
4,418,030	+		AO353_20080	0.75	+0.9
4,418,030	+		AO353_20080	0.75	+1.1
4,418,030	+		AO353_20080	0.75	+1.5
4,418,031	-		AO353_20080	0.75	+0.1
4,418,031	-		AO353_20080	0.75	+0.6
4,418,031	-		AO353_20080	0.75	-0.1
4,418,031	-		AO353_20080	0.75	-0.5
4,418,031	-		AO353_20080	0.75	-2.0
4,418,031	-		AO353_20080	0.75	-0.7
4,418,031	-		AO353_20080	0.75	+0.1
4,418,056	+		AO353_20080	0.76	-0.1
4,418,056	+		AO353_20080	0.76	-0.3
4,418,057	-		AO353_20080	0.76	-1.5
4,418,185	+		AO353_20080	0.82	+0.1
4,418,186	-		AO353_20080	0.82	-0.1
4,418,289	+		AO353_20080	0.87	+1.3
4,418,289	+		AO353_20080	0.87	+1.1
4,418,289	+		AO353_20080	0.87	-1.3
4,418,289	+		AO353_20080	0.87	-0.3
4,418,290	-		AO353_20080	0.87	+0.2
4,418,290	-		AO353_20080	0.87	-0.3
4,418,290	-		AO353_20080	0.87	+0.8
4,418,291	+		AO353_20080	0.87	-1.7
4,418,291	+		AO353_20080	0.87	-1.3
4,418,291	+		AO353_20080	0.87	+0.3
4,418,291	+		AO353_20080	0.87	-0.1
4,418,291	+		AO353_20080	0.87	-0.5
4,418,291	+		AO353_20080	0.87	-1.7
4,418,291	+		AO353_20080	0.87	-0.1
4,418,292	-		AO353_20080	0.87	-1.1
4,418,292	-		AO353_20080	0.87	-1.0
4,418,292	-		AO353_20080	0.87	-1.0
4,418,292	-		AO353_20080	0.87	-0.9
4,418,292	-		AO353_20080	0.87	-2.7
4,418,292	-		AO353_20080	0.87	-0.7
4,418,292	-		AO353_20080	0.87	+0.9
4,418,360	+		AO353_20080	0.90	+1.0
4,418,360	+		AO353_20080	0.90	-0.0
4,418,360	+		AO353_20080	0.90	-1.5
4,418,360	+		AO353_20080	0.90	+0.1
4,418,360	+		AO353_20080	0.90	-0.1
4,418,360	+		AO353_20080	0.90	-0.3
4,418,361	-		AO353_20080	0.90	-0.0
4,418,361	-		AO353_20080	0.90	-0.7
4,418,361	-		AO353_20080	0.90	+0.1
4,418,361	-		AO353_20080	0.90	+1.2
4,418,361	-		AO353_20080	0.90	-1.9
4,418,581	+				-0.5
4,418,581	+				-0.1
4,418,582	-				-0.1
4,418,582	-				-0.1
4,418,582	-				-2.3
4,418,582	-				-0.9
4,418,582	-				-0.0
4,418,622	+				-1.9
4,418,622	+				+0.3
4,418,623	-				-0.1
4,418,623	-				+0.4
4,418,623	-				-3.3
4,418,623	-				+0.9
4,418,626	+				+0.7
4,418,627	-				+0.1
4,418,627	-				+0.1
4,418,627	-				-0.7
4,418,640	+				-0.4
4,418,640	+				-0.2
4,418,640	+				+1.9
4,418,640	+				+0.2
4,418,640	+				-0.5
4,418,640	+				+1.0
4,418,641	-				-1.5
4,418,641	-				-0.5
4,418,886	+		AO353_20085	0.58	-0.4
4,418,886	+		AO353_20085	0.58	-0.0
4,418,886	+		AO353_20085	0.58	-1.1
4,418,887	-		AO353_20085	0.58	+0.1
4,418,887	-		AO353_20085	0.58	-0.6
4,418,889	+		AO353_20085	0.59	+1.2
4,418,889	+		AO353_20085	0.59	-0.1
4,418,889	+		AO353_20085	0.59	+0.5
4,418,890	-		AO353_20085	0.59	-0.3
4,418,890	-		AO353_20085	0.59	-1.1
4,418,890	-		AO353_20085	0.59	-0.7
4,418,890	-		AO353_20085	0.59	+0.9
4,418,916	-		AO353_20085	0.65	-1.1
4,418,929	-		AO353_20085	0.67	-0.1
4,418,929	-		AO353_20085	0.67	+0.6
4,418,932	+		AO353_20085	0.68	-0.9
4,418,933	-		AO353_20085	0.68	+0.3
4,418,933	-		AO353_20085	0.68	-1.9
4,418,933	-		AO353_20085	0.68	-0.1
4,418,952	+		AO353_20085	0.72	+0.1
4,418,952	+		AO353_20085	0.72	-0.7
4,418,952	+		AO353_20085	0.72	+0.5
4,418,953	-		AO353_20085	0.72	+0.3
4,418,953	-		AO353_20085	0.72	+2.9
4,418,953	-		AO353_20085	0.72	-1.5
4,418,953	-		AO353_20085	0.72	+2.4
4,418,964	+		AO353_20085	0.75	-1.3
4,418,964	+		AO353_20085	0.75	+0.5
4,418,964	+		AO353_20085	0.75	+2.1
4,418,965	-		AO353_20085	0.75	-1.7
4,418,965	-		AO353_20085	0.75	+0.6
4,419,126	+				-1.1
4,419,126	+				-0.5
4,419,126	+				+0.3
4,419,126	+				-0.5
4,419,126	+				+0.5
4,419,188	+				-1.7
4,419,188	+				+0.1
4,419,188	+				-1.1
4,419,188	+				-0.1
4,419,188	+				-1.5
4,419,189	-				-0.9
4,419,226	+				+0.3
4,419,227	-				+0.4
4,419,262	+				-0.7
4,419,262	+				+0.6
4,419,262	+				+0.3
4,419,262	+				+1.1
4,419,262	+				-1.1
4,419,263	-				-0.1
4,419,263	-				-0.9
4,419,348	+		AO353_20090	0.20	+0.0
4,419,443	+		AO353_20090	0.34	-0.1
4,419,443	+		AO353_20090	0.34	-2.0
4,419,443	+		AO353_20090	0.34	-0.6
4,419,443	+		AO353_20090	0.34	-1.4
4,419,443	+		AO353_20090	0.34	+1.7
4,419,443	+		AO353_20090	0.34	+0.4
4,419,444	-		AO353_20090	0.35	+0.3
4,419,466	+		AO353_20090	0.38	+0.0
4,419,507	+		AO353_20090	0.44	-1.7
4,419,508	-		AO353_20090	0.44	+0.5
4,419,508	-		AO353_20090	0.44	+1.1
4,419,571	-		AO353_20090	0.54	-1.9
4,419,579	-		AO353_20090	0.55	-0.0