Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19060

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
4,182,956	+		AO353_19050	0.79	+1.1
4,182,957	-		AO353_19050	0.79	-0.1
4,182,975	-		AO353_19050	0.81	-0.2
4,183,143	+				+0.2
4,183,144	-				+0.9
4,183,144	-				-0.1
4,183,195	+				+2.5
4,183,206	-				-0.7
4,183,206	-				+1.9
4,183,257	+				-3.2
4,183,257	+				-3.2
4,183,257	+				-3.3
4,183,257	+				-1.2
4,183,257	+				-3.1
4,183,257	+				-3.4
4,183,257	+				-1.1
4,183,257	+				-1.9
4,183,257	+				-1.2
4,183,257	+				-0.7
4,183,257	+				-0.8
4,183,257	+				-0.8
4,183,257	+				-3.2
4,183,257	+				-1.1
4,183,257	+				-1.5
4,183,258	-				+0.9
4,183,258	-				-0.1
4,183,258	-				-2.8
4,183,258	-				-1.1
4,183,258	-				-2.2
4,183,258	-				-1.2
4,183,258	-				-1.7
4,183,258	-				-2.2
4,183,258	-				-2.5
4,183,258	-				-2.2
4,183,278	+				-2.9
4,183,278	+				-2.2
4,183,279	-				-1.1
4,183,279	-				-3.8
4,183,338	+		AO353_19055	0.20	-1.2
4,183,338	+		AO353_19055	0.20	-1.7
4,183,338	+		AO353_19055	0.20	-1.9
4,183,338	+		AO353_19055	0.20	-1.7
4,183,338	+		AO353_19055	0.20	-2.1
4,183,338	+		AO353_19055	0.20	-1.1
4,183,339	-		AO353_19055	0.20	-2.2
4,183,339	-		AO353_19055	0.20	-4.0
4,183,339	-		AO353_19055	0.20	-2.5
4,183,339	-		AO353_19055	0.20	-1.9
4,183,339	-		AO353_19055	0.20	-1.4
4,183,339	-		AO353_19055	0.20	-1.4
4,183,339	-		AO353_19055	0.20	-1.4
4,183,339	-		AO353_19055	0.20	-1.2
4,183,361	+		AO353_19055	0.24	-2.0
4,183,361	+		AO353_19055	0.24	-2.9
4,183,362	-		AO353_19055	0.25	-1.1
4,183,362	-		AO353_19055	0.25	-1.4
4,183,395	+		AO353_19055	0.31	-1.7
4,183,395	+		AO353_19055	0.31	-1.2
4,183,395	+		AO353_19055	0.31	-4.5
4,183,395	+		AO353_19055	0.31	-0.7
4,183,396	-		AO353_19055	0.31	-0.1
4,183,396	-		AO353_19055	0.31	-2.2
4,183,396	-		AO353_19055	0.31	-4.0
4,183,396	-		AO353_19055	0.31	-0.1
4,183,396	-		AO353_19055	0.31	+0.6
4,183,396	-		AO353_19055	0.31	-1.9
4,183,540	+		AO353_19055	0.60	-2.1
4,183,540	+		AO353_19055	0.60	-1.1
4,183,540	+		AO353_19055	0.60	-0.8
4,183,541	-		AO353_19055	0.60	-2.9
4,183,541	-		AO353_19055	0.60	-1.1
4,183,609	+		AO353_19055	0.74	-3.2
4,183,609	+		AO353_19055	0.74	-0.9
4,183,610	-		AO353_19055	0.74	-3.3
4,183,610	-		AO353_19055	0.74	-1.4
4,183,733	+				-0.7
4,183,733	+				-0.3
4,183,737	+				-0.0
4,183,737	+				+0.7
4,183,737	+				-0.7
4,183,737	+				-0.3
4,183,737	+				-0.9
4,183,738	-				-1.7
4,183,798	-				-0.7
4,183,800	-				-2.4
4,183,800	-				-1.9
4,183,803	+				+0.5
4,183,803	+				+0.1
4,183,803	+				+2.7
4,183,806	-				+0.9
4,183,832	+				+1.6
4,183,832	+				-0.9
4,183,833	-				+0.9
4,183,833	-				+0.1
4,183,852	+				-1.9
4,183,852	+				-0.7
4,183,852	+				-0.1
4,183,853	-				-1.1
4,183,874	+				+0.9
4,183,874	+				-1.4
4,183,875	-				-1.1
4,183,931	+				-2.7
4,183,931	+				+0.5
4,183,931	+				-2.5
4,183,931	+				-0.7
4,183,932	-				-2.7
4,183,932	-				-1.1
4,183,932	-				+0.2
4,184,169	-		AO353_19060	0.32	+0.9
4,184,362	-		AO353_19060	0.52	-0.7
4,184,441	+		AO353_19060	0.60	+0.3
4,184,441	+		AO353_19060	0.60	+0.9
4,184,441	+				-0.1
4,184,441	+		AO353_19060	0.60	-3.2
4,184,441	+				-0.1
4,184,441	+				-0.1
4,184,441	+		AO353_19060	0.60	+0.7
4,184,442	-		AO353_19060	0.60	-0.1
4,184,442	-		AO353_19060	0.60	-1.1
4,184,442	-		AO353_19060	0.60	-0.7
4,184,442	-		AO353_19060	0.60	+0.9
4,184,442	-				-0.1
4,184,442	-		AO353_19060	0.60	-2.4
4,184,442	-		AO353_19060	0.60	+0.9
4,184,549	+		AO353_19060	0.71	-2.4
4,184,549	+		AO353_19060	0.71	-1.4
4,184,549	+		AO353_19060	0.71	-0.7
4,184,549	+		AO353_19060	0.71	-1.2
4,184,549	+		AO353_19060	0.71	-1.1
4,184,549	+		AO353_19060	0.71	+0.9
4,184,549	+		AO353_19060	0.71	-3.1
4,184,549	+		AO353_19060	0.71	-1.9
4,184,549	+		AO353_19060	0.71	-1.9
4,184,550	-		AO353_19060	0.71	+0.9
4,184,550	-		AO353_19060	0.71	-2.7
4,184,550	-		AO353_19060	0.71	-0.1
4,184,550	-		AO353_19060	0.71	-1.1
4,184,550	-		AO353_19060	0.71	-1.1
4,184,814	+				-0.4
4,184,834	+				+1.2
4,184,834	+				+0.1
4,184,834	+				+2.5
4,184,835	-				-1.3
4,184,835	-				-0.3
4,184,835	-				+0.2
4,185,080	+		AO353_19065	0.51	-1.1
4,185,080	+		AO353_19065	0.51	-0.7
4,185,080	+		AO353_19065	0.51	+0.4
4,185,080	+		AO353_19065	0.51	+0.5
4,185,080	+		AO353_19065	0.51	-1.4
4,185,081	-		AO353_19065	0.51	+0.9
4,185,081	-		AO353_19065	0.51	+0.6
4,185,081	-		AO353_19065	0.51	-1.3
4,185,161	+		AO353_19065	0.68	-0.6
4,185,161	+		AO353_19065	0.68	+1.2
4,185,161	+		AO353_19065	0.68	+0.9
4,185,161	+		AO353_19065	0.68	+1.0
4,185,161	+		AO353_19065	0.68	+0.7
4,185,161	+		AO353_19065	0.68	-1.1
4,185,162	-		AO353_19065	0.68	-1.7
4,185,162	-		AO353_19065	0.68	+2.5
4,185,188	+		AO353_19065	0.73	-3.1
4,185,188	+		AO353_19065	0.73	+1.7
4,185,188	+		AO353_19065	0.73	-0.4
4,185,188	+		AO353_19065	0.73	-0.2
4,185,188	+		AO353_19065	0.73	+0.4
4,185,188	+		AO353_19065	0.73	+0.9
4,185,188	+		AO353_19065	0.73	-1.7
4,185,189	-		AO353_19065	0.74	-0.1
4,185,189	-		AO353_19065	0.74	-0.2
4,185,189	-		AO353_19065	0.74	-0.2
4,185,189	-		AO353_19065	0.74	-1.0
4,185,189	-		AO353_19065	0.74	+2.3
4,185,231	-		AO353_19065	0.82	+0.2
4,185,419	+		AO353_19070	0.25	+2.7
4,185,419	+		AO353_19070	0.25	-0.5
4,185,478	+		AO353_19070	0.40	+0.1
4,185,478	+		AO353_19070	0.40	+0.1
4,185,478	+		AO353_19070	0.40	+0.4
4,185,478	+		AO353_19070	0.40	+1.4
4,185,479	-		AO353_19070	0.40	+0.6
4,185,479	-		AO353_19070	0.40	+1.1
4,185,537	+		AO353_19070	0.54	-2.4
4,185,712	+				-0.1
4,185,771	-				+0.0
4,185,803	+				-1.0
4,185,803	+				+0.4
4,185,815	+				+1.9
4,185,815	+				+4.0
4,185,815	+				-0.1
4,185,815	+				+0.3
4,185,815	+				+0.3
4,185,815	+				+0.1
4,185,816	-				+2.0
4,185,816	-				+1.2
4,185,816	-				+1.5
4,185,816	-				+2.2
4,185,816	-				-0.1
4,185,816	-				-1.3