Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18425

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
4,057,538	-		AO353_18415	0.77	-0.2
4,057,538	-		AO353_18415	0.77	+1.3
4,057,538	-		AO353_18415	0.77	-0.4
4,057,616	+		AO353_18415	0.81	-1.2
4,057,744	+		AO353_18415	0.88	+1.6
4,057,755	+		AO353_18415	0.88	-1.0
4,057,755	+		AO353_18415	0.88	-1.0
4,057,756	-		AO353_18415	0.89	+1.1
4,057,756	-		AO353_18415	0.89	-0.6
4,057,756	-		AO353_18415	0.89	+3.3
4,057,877	+				-0.0
4,057,877	+				+0.7
4,057,877	+				+0.5
4,057,877	+				+0.8
4,057,878	-				-0.5
4,057,878	-				-0.0
4,057,878	-				+0.7
4,057,878	-				-1.3
4,058,017	+				-0.0
4,058,017	+				+1.3
4,058,017	+				+0.6
4,058,017	+				+0.1
4,058,017	+				+1.0
4,058,018	-				-2.2
4,058,018	-				-2.5
4,058,018	-				+0.1
4,058,018	-				-0.6
4,058,018	-				-1.2
4,058,018	-				+1.6
4,058,018	-				+0.2
4,058,018	-				+1.0
4,058,018	-				+0.6
4,058,052	+				-1.6
4,058,052	+				-2.0
4,058,110	+				+0.4
4,058,110	+				-0.0
4,058,110	+				-0.0
4,058,111	-				+1.4
4,058,111	-				+1.7
4,058,111	-				-1.2
4,058,125	-				+1.0
4,058,159	+				+3.0
4,058,159	+				+3.6
4,058,159	+				-1.8
4,058,159	+				-0.0
4,058,160	-				-0.3
4,058,160	-				-1.0
4,058,161	+				+0.4
4,058,161	+				-0.5
4,058,161	+				+0.6
4,058,161	+				-0.6
4,058,161	+				-0.3
4,058,161	+				-0.8
4,058,161	+				+1.3
4,058,161	+				-0.4
4,058,161	+				-0.8
4,058,161	+				-0.7
4,058,161	+				+1.0
4,058,161	+				-1.3
4,058,161	+				+1.0
4,058,161	+				-0.6
4,058,161	+				-1.6
4,058,161	+				-0.0
4,058,161	+				-1.8
4,058,161	+				-0.3
4,058,161	+				+0.3
4,058,161	+				-0.2
4,058,161	+				-0.7
4,058,161	+				+1.7
4,058,161	+				+0.8
4,058,162	+				-0.0
4,058,162	-				-1.7
4,058,162	-				-0.0
4,058,162	-				-2.3
4,058,162	-				-0.2
4,058,162	-				+0.7
4,058,162	-				-1.0
4,058,162	-				+1.0
4,058,162	-				-0.6
4,058,266	+		AO353_18420	0.35	-0.6
4,058,266	+		AO353_18420	0.35	-1.0
4,058,267	-		AO353_18420	0.35	+0.3
4,058,267	-		AO353_18420	0.35	-2.8
4,058,305	+		AO353_18420	0.45	+0.8
4,058,305	+		AO353_18420	0.45	-2.6
4,058,305	+		AO353_18420	0.45	-1.8
4,058,306	-		AO353_18420	0.45	-0.2
4,058,353	+		AO353_18420	0.57	-0.0
4,058,353	+		AO353_18420	0.57	-0.9
4,058,353	+		AO353_18420	0.57	-0.0
4,058,354	-		AO353_18420	0.57	+1.7
4,058,419	-		AO353_18420	0.74	+1.3
4,058,482	+		AO353_18420	0.90	-1.7
4,058,483	-				+1.2
4,058,508	+				+1.6
4,058,534	+				+0.3
4,058,534	+				+0.7
4,058,534	+				-2.5
4,058,535	-				+0.5
4,058,535	-				-0.6
4,058,535	-				-0.0
4,058,535	-				+0.2
4,058,591	+				-0.0
4,058,592	-		AO353_18425	0.10	+2.0
4,058,592	-		AO353_18425	0.10	-1.8
4,058,592	-		AO353_18425	0.10	-2.0
4,058,887	-		AO353_18425	0.60	-0.8
4,059,026	+		AO353_18425	0.84	-1.2
4,059,026	+		AO353_18425	0.84	-1.3
4,059,027	-		AO353_18425	0.84	-1.8
4,059,044	+		AO353_18425	0.87	-1.5
4,059,044	+		AO353_18425	0.87	-0.6
4,059,044	+		AO353_18425	0.87	-0.0
4,059,044	+		AO353_18425	0.87	-0.0
4,059,044	+		AO353_18425	0.87	-1.0
4,059,045	-		AO353_18425	0.87	+1.0
4,059,045	-		AO353_18425	0.87	-2.0
4,059,045	-		AO353_18425	0.87	-1.8
4,059,045	-		AO353_18425	0.87	-0.6
4,059,045	-		AO353_18425	0.87	+2.6
4,059,100	+				-2.9
4,059,100	+				-0.0
4,059,129	+				-0.3
4,059,141	-				-1.0
4,059,142	+				+1.0
4,059,142	+				-0.2
4,059,142	+				+0.2
4,059,142	+				+1.0
4,059,142	+				-0.2
4,059,142	+				-2.2
4,059,142	+				-0.8
4,059,142	+				+2.3
4,059,142	+				+1.0
4,059,142	+				+1.0
4,059,143	-				-0.0
4,059,143	-				-1.0
4,059,143	-				-0.6
4,059,143	-				+1.0
4,059,143	-				-3.0
4,059,143	-				-1.6
4,059,143	-				+1.2
4,059,143	-				+1.0
4,059,143	-				+1.7
4,059,143	-				-1.0
4,059,143	-				+0.2
4,059,143	-				+1.0
4,059,143	-				+0.4
4,059,143	-				+1.2
4,059,157	+				-1.2
4,059,218	+				-1.8
4,059,218	+				-1.1
4,059,260	+				+0.4
4,059,260	+				-1.7
4,059,298	+				+0.6
4,059,299	-				+0.8
4,059,300	+				-1.3
4,059,300	+				+0.1
4,059,300	+				-0.0
4,059,300	+				-2.8
4,059,300	+				+0.6
4,059,301	-				-1.5
4,059,301	-				-0.0
4,059,409	+				+0.4
4,059,410	-				+0.7
4,059,410	-				+0.5
4,059,767	+		AO353_18430	0.16	+1.2
4,059,768	-		AO353_18430	0.16	-1.6
4,059,893	+		AO353_18430	0.22	-0.5
4,059,893	+		AO353_18430	0.22	-2.0
4,059,894	-		AO353_18430	0.22	-0.0
4,060,053	-		AO353_18430	0.29	-2.1