Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15975

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
3,528,208	+		AO353_15970	0.70	-1.0
3,528,208	+		AO353_15970	0.70	-0.2
3,528,208	+		AO353_15970	0.70	+0.6
3,528,208	+		AO353_15970	0.70	-0.4
3,528,209	-		AO353_15970	0.70	+0.2
3,528,209	-		AO353_15970	0.70	+0.6
3,528,209	-		AO353_15970	0.70	-0.8
3,528,407	+		AO353_15970	0.79	+1.4
3,528,455	+		AO353_15970	0.81	-1.7
3,528,455	+		AO353_15970	0.81	-0.4
3,528,557	-		AO353_15970	0.86	+0.8
3,528,557	-		AO353_15970	0.86	-0.9
3,528,557	-		AO353_15970	0.86	-0.8
3,528,610	+		AO353_15970	0.89	-0.8
3,528,610	+		AO353_15970	0.89	+1.1
3,528,610	+		AO353_15970	0.89	+0.8
3,528,610	+		AO353_15970	0.89	+0.2
3,528,610	+		AO353_15970	0.89	-0.2
3,528,610	+		AO353_15970	0.89	-1.2
3,528,611	-		AO353_15970	0.89	-0.8
3,528,611	-		AO353_15970	0.89	+1.4
3,528,611	-		AO353_15970	0.89	+0.1
3,528,611	-		AO353_15970	0.89	+0.5
3,528,611	-		AO353_15970	0.89	-2.0
3,528,757	-				+0.7
3,528,757	-				-1.9
3,528,822	+				+0.8
3,528,822	+				+0.9
3,528,822	+				-2.3
3,528,823	-				+0.8
3,528,823	-				+0.6
3,528,823	-				-0.8
3,528,834	+				-0.3
3,528,834	+				-0.4
3,528,835	-				+0.1
3,528,885	+				+0.9
3,528,885	+				-0.8
3,528,885	+				+0.1
3,528,885	+				-0.9
3,528,897	+				-0.8
3,528,897	+				+0.7
3,528,897	+				+0.6
3,528,898	-				+0.8
3,528,898	-				-1.3
3,528,898	-				+2.2
3,528,898	-				-0.7
3,528,898	-				+1.2
3,528,898	-				-1.4
3,528,985	-				+0.2
3,528,999	+				+1.4
3,528,999	+				-1.6
3,529,000	-				-1.8
3,529,000	-				+0.2
3,529,000	-				-0.4
3,529,000	-				+0.3
3,529,026	+				-0.5
3,529,026	+				-0.4
3,529,136	+				-0.4
3,529,152	+				-0.8
3,529,153	-				-0.8
3,529,169	+				+0.1
3,529,170	-				-2.6
3,529,170	-				-0.4
3,529,170	-				+1.0
3,529,170	-				-1.4
3,529,337	+		AO353_15975	0.32	-1.8
3,529,337	+		AO353_15975	0.32	-1.6
3,529,337	+		AO353_15975	0.32	+0.7
3,529,337	+		AO353_15975	0.32	-0.4
3,529,337	+		AO353_15975	0.32	-0.1
3,529,338	-		AO353_15975	0.32	+0.3
3,529,338	-		AO353_15975	0.32	-1.8
3,529,338	-		AO353_15975	0.32	-2.5
3,529,338	-		AO353_15975	0.32	+0.3
3,529,559	+		AO353_15975	0.64	+0.2
3,529,559	+		AO353_15975	0.64	-1.5
3,529,559	+		AO353_15975	0.64	-1.6
3,529,560	-		AO353_15975	0.64	-0.8
3,529,619	-		AO353_15975	0.72	+1.5
3,529,709	+		AO353_15975	0.85	-2.6
3,529,709	+		AO353_15975	0.85	-0.4
3,529,709	+		AO353_15975	0.85	+0.7
3,529,709	+		AO353_15975	0.85	-1.1
3,529,710	-		AO353_15975	0.85	-3.8
3,529,793	+				-1.1
3,529,793	+				+0.2
3,529,794	-				-2.3
3,529,794	-				+0.0
3,529,805	+				-1.9
3,529,805	+				+0.2
3,529,805	+				-0.6
3,529,805	+				-0.6
3,529,805	+				-1.8
3,529,805	+				-0.8
3,529,805	+				+0.8
3,529,805	+				+0.5
3,529,806	-				-0.0
3,529,806	-				-0.4
3,529,806	-				-0.8
3,529,806	-				-0.6
3,529,818	+				-0.4
3,529,819	-				+0.9
3,529,819	-				-0.5
3,529,877	+				+0.2
3,529,877	+				-1.8
3,529,878	-				-0.3
3,529,878	-				-1.0
3,529,905	+				-1.4
3,529,906	-				-0.5
3,529,906	-				-0.7
3,529,906	-				-0.0
3,529,929	+				-1.9
3,529,951	+				+2.2
3,529,958	+				+1.7
3,529,966	+				-1.4
3,529,967	-				-0.2
3,529,973	+				-0.1
3,529,983	+				-0.8
3,530,059	-				-2.0
3,530,079	+				-0.6
3,530,080	-				+0.7
3,530,080	-				+0.1
3,530,125	-				-2.1
3,530,263	+		AO353_15980	0.16	-0.8
3,530,263	+		AO353_15980	0.16	-0.6
3,530,263	+		AO353_15980	0.16	+0.5
3,530,264	-		AO353_15980	0.16	+0.9
3,530,264	-		AO353_15980	0.16	-0.3
3,530,264	-		AO353_15980	0.16	-1.0
3,530,662	+		AO353_15980	0.43	-0.0
3,530,662	+		AO353_15980	0.43	-0.5
3,530,662	+		AO353_15980	0.43	-0.4
3,530,705	-		AO353_15980	0.46	-0.2
3,530,712	+		AO353_15980	0.47	-1.1
3,530,782	+		AO353_15980	0.52	-0.4
3,530,783	-		AO353_15980	0.52	-1.3
3,530,783	-		AO353_15980	0.52	+2.4
3,530,783	-		AO353_15980	0.52	+0.5
3,530,783	-		AO353_15980	0.52	+0.6
3,530,783	-		AO353_15980	0.52	-0.0