Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14425

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
3,198,746	+		AO353_14415	0.89	+1.3
3,198,746	+		AO353_14415	0.89	-1.3
3,198,746	+		AO353_14415	0.89	-1.5
3,198,746	+		AO353_14415	0.89	+1.5
3,198,746	+		AO353_14415	0.89	+1.7
3,198,747	-		AO353_14415	0.89	-1.5
3,198,747	-		AO353_14415	0.89	-1.7
3,198,747	-		AO353_14415	0.89	+0.3
3,198,747	-		AO353_14415	0.89	-0.9
3,198,747	-		AO353_14415	0.89	-3.1
3,198,818	+				-1.9
3,198,818	+				-1.7
3,198,818	+				-0.3
3,198,818	+				+0.1
3,198,819	-				-0.3
3,198,819	-				-1.5
3,198,855	+				-0.4
3,198,855	+				+1.0
3,198,855	+				+1.1
3,198,855	+				-1.5
3,198,855	+				+1.6
3,198,855	+				+0.9
3,198,855	+				-0.1
3,198,856	-				-1.3
3,198,856	-				+0.5
3,198,856	-				+0.7
3,198,856	-				-0.4
3,198,856	-				-0.2
3,198,929	+				+0.1
3,198,929	+				+0.3
3,198,929	+				+0.4
3,198,929	+				-0.2
3,198,929	+				-0.9
3,198,929	+				-1.5
3,198,930	-				+1.4
3,198,930	-				+1.6
3,198,930	-				-0.5
3,198,930	-				-0.7
3,198,930	-				-0.0
3,198,930	-				-0.2
3,198,930	-				+0.2
3,198,930	-				+0.8
3,198,930	-				+0.3
3,198,930	-				-1.5
3,198,930	-				-1.0
3,199,292	+		AO353_14420	0.81	+0.4
3,199,292	+		AO353_14420	0.81	-1.0
3,199,292	+		AO353_14420	0.81	+0.3
3,199,292	+		AO353_14420	0.81	+0.3
3,199,292	+		AO353_14420	0.81	+0.3
3,199,293	-		AO353_14420	0.82	+1.3
3,199,314	+		AO353_14420	0.86	-0.7
3,199,315	-		AO353_14420	0.87	+0.9
3,199,315	-		AO353_14420	0.87	+1.3
3,199,316	+		AO353_14420	0.87	+0.3
3,199,316	+		AO353_14420	0.87	+1.3
3,199,317	-		AO353_14420	0.87	-0.7
3,199,317	-		AO353_14420	0.87	-0.3
3,199,317	-		AO353_14420	0.87	+0.3
3,199,317	-		AO353_14420	0.87	+0.3
3,199,317	-		AO353_14420	0.87	-0.3
3,199,465	+				-1.7
3,199,466	-				-1.3
3,199,466	-				+1.3
3,199,466	-				-1.4
3,199,572	+				+0.5
3,199,581	+				+0.0
3,199,581	+				-0.3
3,199,581	+				+1.3
3,199,598	+				-2.0
3,199,598	+				-0.5
3,199,598	+				-3.0
3,199,598	+				+0.3
3,199,598	+				+0.1
3,199,598	+				+0.5
3,199,598	+				-1.0
3,199,598	+				-0.9
3,199,598	+				-1.7
3,199,598	+				-0.0
3,199,598	+				+1.0
3,199,598	+				-0.5
3,199,598	+				-1.6
3,199,598	+				-1.9
3,199,598	+				+0.3
3,199,598	+				+0.0
3,199,598	+				-1.2
3,199,598	+				-3.5
3,199,598	+				+0.5
3,199,599	-				-0.4
3,199,599	-				-0.7
3,199,599	-				+2.6
3,199,599	-				-0.3
3,199,599	-				-0.7
3,199,599	-				-0.3
3,199,599	-				-0.4
3,199,599	-				+0.3
3,199,599	-				-0.1
3,199,599	-				+0.3
3,199,599	-				+0.7
3,199,599	-				+0.9
3,199,599	-				+0.5
3,199,602	+				+0.9
3,199,602	+				-2.3
3,199,602	+				+0.2
3,199,602	+				-0.0
3,199,602	+				-1.9
3,199,602	+				-0.1
3,199,602	+				-0.4
3,199,602	+				+0.6
3,199,603	-				-0.8
3,199,603	-				-1.5
3,199,603	-				-0.3
3,199,603	-				+0.2
3,199,603	-				+0.6
3,199,603	-				+0.4
3,199,603	-				+0.8
3,199,603	-				-0.1
3,199,615	-				+1.3
3,199,643	+				+3.0
3,199,643	+				+1.3
3,199,644	-				+0.1
3,199,644	-				-0.2
3,199,644	-				-0.3
3,199,672	-				-1.9
3,199,672	-				-0.1
3,199,706	-				-1.3
3,199,719	+				-1.3
3,199,719	+				-0.6
3,199,719	+				-1.5
3,199,719	+				-1.3
3,199,719	+				-0.7
3,199,720	-				+0.3
3,199,899	+		AO353_14425	0.16	-0.0
3,199,950	+		AO353_14425	0.21	+0.9
3,199,951	-		AO353_14425	0.21	-1.5
3,199,951	-		AO353_14425	0.21	+0.6
3,200,021	-		AO353_14425	0.27	+0.1
3,200,021	-		AO353_14425	0.27	-0.8
3,200,325	+		AO353_14425	0.53	+1.3
3,200,325	+		AO353_14425	0.53	+1.3
3,200,325	+		AO353_14425	0.53	-0.9
3,200,325	+		AO353_14425	0.53	+0.6
3,200,325	+		AO353_14425	0.53	+0.4
3,200,326	-		AO353_14425	0.53	-1.0
3,200,326	-		AO353_14425	0.53	+0.7
3,200,340	+		AO353_14425	0.54	+0.3
3,200,340	+		AO353_14425	0.54	-0.3
3,200,340	+		AO353_14425	0.54	+0.0
3,200,341	-		AO353_14425	0.54	+0.9
3,200,341	-		AO353_14425	0.54	-1.9
3,200,409	+		AO353_14425	0.60	+1.2
3,200,410	-		AO353_14425	0.60	+0.7
3,200,410	-		AO353_14425	0.60	+0.6
3,200,410	-		AO353_14425	0.60	+0.4
3,200,410	-		AO353_14425	0.60	+1.1
3,200,410	-		AO353_14425	0.60	+0.0
3,200,410	-		AO353_14425	0.60	+0.9
3,200,410	-		AO353_14425	0.60	-0.2
3,200,410	-		AO353_14425	0.60	-0.6
3,200,496	+		AO353_14425	0.67	+0.7
3,200,497	-		AO353_14425	0.67	+0.6
3,200,497	-		AO353_14425	0.67	-1.9
3,200,497	-		AO353_14425	0.67	-1.3
3,200,497	-		AO353_14425	0.67	+1.9
3,200,497	-		AO353_14425	0.67	+0.2
3,200,497	-		AO353_14425	0.67	+0.3
3,200,667	+		AO353_14425	0.82	+1.0
3,200,667	+		AO353_14425	0.82	+0.4
3,200,667	+		AO353_14425	0.82	+1.3
3,200,667	+		AO353_14425	0.82	-0.7
3,200,667	+		AO353_14425	0.82	-0.3
3,200,667	+		AO353_14425	0.82	+2.0
3,200,667	+		AO353_14425	0.82	-1.0
3,200,667	+		AO353_14425	0.82	+1.2
3,200,667	+		AO353_14425	0.82	+1.5
3,200,667	+		AO353_14425	0.82	-0.3
3,200,667	+		AO353_14425	0.82	+1.9
3,200,667	+		AO353_14425	0.82	-0.5
3,200,667	+		AO353_14425	0.82	+0.4
3,200,667	+		AO353_14425	0.82	-0.6
3,200,667	+		AO353_14425	0.82	-1.0
3,200,667	+		AO353_14425	0.82	+2.0
3,200,667	+		AO353_14425	0.82	+0.8
3,200,667	+		AO353_14425	0.82	+0.3
3,200,667	+		AO353_14425	0.82	+1.0
3,200,667	+		AO353_14425	0.82	+0.2
3,200,668	-		AO353_14425	0.82	+1.3
3,200,668	-		AO353_14425	0.82	+0.9
3,200,668	-		AO353_14425	0.82	-0.1
3,200,668	-		AO353_14425	0.82	-0.4
3,200,668	-		AO353_14425	0.82	-1.5
3,200,668	-		AO353_14425	0.82	+0.3
3,200,668	-		AO353_14425	0.82	+1.3
3,200,668	-		AO353_14425	0.82	-0.4
3,200,668	-		AO353_14425	0.82	-0.1
3,200,668	-		AO353_14425	0.82	+1.0
3,200,668	-		AO353_14425	0.82	-0.3
3,200,668	-		AO353_14425	0.82	+0.7
3,200,668	-		AO353_14425	0.82	+0.1
3,200,668	-		AO353_14425	0.82	+0.9
3,200,673	+		AO353_14425	0.82	+1.0
3,200,673	+		AO353_14425	0.82	+0.4
3,200,673	+		AO353_14425	0.82	-1.7
3,200,674	-		AO353_14425	0.82	+0.2
3,200,674	-		AO353_14425	0.82	+0.3
3,200,674	-		AO353_14425	0.82	+0.0
3,200,674	-		AO353_14425	0.82	+1.1
3,200,674	-		AO353_14425	0.82	+1.1
3,200,674	-		AO353_14425	0.82	+0.5
3,200,805	+				+0.3
3,200,924	+				-1.4
3,200,924	+				+0.3
3,200,924	+				-0.4
3,201,136	+		AO353_14430	0.36	-0.4
3,201,136	+		AO353_14430	0.36	-2.4
3,201,136	+		AO353_14430	0.36	+0.7
3,201,136	+		AO353_14430	0.36	-1.0
3,201,136	+		AO353_14430	0.36	+1.3
3,201,137	-		AO353_14430	0.36	+0.4
3,201,137	-		AO353_14430	0.36	+1.6
3,201,137	-		AO353_14430	0.36	-0.8
3,201,137	-		AO353_14430	0.36	+1.1
3,201,156	+		AO353_14430	0.39	-2.2
3,201,156	+		AO353_14430	0.39	-0.2
3,201,157	-		AO353_14430	0.39	-0.6
3,201,157	-		AO353_14430	0.39	+0.9
3,201,157	-		AO353_14430	0.39	-0.0
3,201,395	-		AO353_14430	0.72	-0.3
3,201,395	-		AO353_14430	0.72	+1.2
3,201,413	+		AO353_14430	0.75	+0.6
3,201,413	+		AO353_14430	0.75	+0.1
3,201,413	+		AO353_14430	0.75	+1.3
3,201,413	+		AO353_14430	0.75	+0.1
3,201,414	-		AO353_14430	0.75	-0.1
3,201,414	-		AO353_14430	0.75	-0.4
3,201,414	-		AO353_14430	0.75	-0.9
3,201,414	-		AO353_14430	0.75	-0.4
3,201,524	+				-2.6
3,201,524	+				+0.4
3,201,552	+				-0.0
3,201,552	+				-0.9
3,201,552	+				-0.3
3,201,552	+				+1.7
3,201,552	+				-0.5
3,201,553	-				-2.7
3,201,553	-				-0.4
3,201,553	-				-0.1
3,201,553	-				+1.1
3,201,553	-				-0.1
3,201,596	+				-1.0
3,201,596	+				+0.3
3,201,607	-				-0.3
3,201,607	-				+0.1
3,201,813	+		AO353_14435	0.65	-0.1
3,201,813	+		AO353_14435	0.65	-0.4
3,201,819	+		AO353_14435	0.67	-0.2
3,201,819	+		AO353_14435	0.67	-0.4
3,201,820	-		AO353_14435	0.68	-1.0
3,201,820	-		AO353_14435	0.68	-1.7
3,201,820	-		AO353_14435	0.68	-0.5
3,201,820	-		AO353_14435	0.68	-1.5
3,201,820	-		AO353_14435	0.68	+0.6
3,201,820	-		AO353_14435	0.68	-2.3
3,201,820	-		AO353_14435	0.68	-0.7
3,201,820	-		AO353_14435	0.68	-1.0
3,201,839	+		AO353_14435	0.74	-0.7