Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08520

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
1,871,672	+		AO353_08510	0.77	-1.9
1,871,673	-		AO353_08510	0.77	-2.7
1,871,673	-		AO353_08510	0.77	-2.3
1,871,686	+		AO353_08510	0.78	+1.2
1,871,687	-		AO353_08510	0.78	-2.7
1,871,687	-		AO353_08510	0.78	-0.4
1,871,781	+		AO353_08510	0.85	-0.4
1,871,782	-		AO353_08510	0.86	-1.2
1,871,782	-		AO353_08510	0.86	-1.9
1,871,892	-				-2.1
1,871,957	+				+0.8
1,871,957	+				+0.8
1,871,957	+				+1.1
1,871,957	+				-2.4
1,871,957	+				-0.8
1,871,957	+				+0.3
1,871,958	-				-1.8
1,871,958	-				-1.9
1,871,958	-				-1.9
1,871,974	+				-2.6
1,871,975	-				-0.8
1,871,975	-				-0.2
1,872,022	+				-0.5
1,872,023	-				-1.2
1,872,023	-				-2.1
1,872,023	-				+1.6
1,872,023	-				-0.9
1,872,028	-				+1.6
1,872,311	+		AO353_08515	0.66	-1.1
1,872,311	+		AO353_08515	0.66	+2.0
1,872,311	+		AO353_08515	0.66	-1.6
1,872,311	+		AO353_08515	0.66	-0.8
1,872,311	+		AO353_08515	0.66	-0.8
1,872,311	+		AO353_08515	0.66	+0.9
1,872,311	+		AO353_08515	0.66	-2.0
1,872,311	+		AO353_08515	0.66	+0.7
1,872,312	-		AO353_08515	0.66	-2.7
1,872,312	-		AO353_08515	0.66	-0.7
1,872,312	-		AO353_08515	0.66	-1.2
1,872,312	-		AO353_08515	0.66	-0.7
1,872,312	-		AO353_08515	0.66	-1.9
1,872,312	-		AO353_08515	0.66	-0.0
1,872,312	-		AO353_08515	0.66	+2.3
1,872,315	+		AO353_08515	0.67	+0.7
1,872,315	+		AO353_08515	0.67	-1.2
1,872,315	+		AO353_08515	0.67	+1.0
1,872,315	+		AO353_08515	0.67	-2.4
1,872,315	+		AO353_08515	0.67	+1.6
1,872,315	+		AO353_08515	0.67	+1.2
1,872,316	-		AO353_08515	0.67	+0.5
1,872,316	-		AO353_08515	0.67	-0.5
1,872,344	+		AO353_08515	0.74	+1.0
1,872,344	+		AO353_08515	0.74	-1.0
1,872,345	-		AO353_08515	0.74	-1.4
1,872,346	+		AO353_08515	0.74	-0.8
1,872,346	+		AO353_08515	0.74	+2.2
1,872,346	+		AO353_08515	0.74	+1.3
1,872,346	+		AO353_08515	0.74	+1.3
1,872,346	+		AO353_08515	0.74	+1.4
1,872,346	+		AO353_08515	0.74	-0.8
1,872,346	+		AO353_08515	0.74	-0.4
1,872,346	+		AO353_08515	0.74	+0.2
1,872,346	+		AO353_08515	0.74	+1.2
1,872,346	+		AO353_08515	0.74	+1.1
1,872,346	+		AO353_08515	0.74	+0.1
1,872,346	+		AO353_08515	0.74	-1.4
1,872,346	+		AO353_08515	0.74	-0.4
1,872,346	+		AO353_08515	0.74	+0.8
1,872,346	+		AO353_08515	0.74	+0.2
1,872,346	+		AO353_08515	0.74	+0.7
1,872,347	-		AO353_08515	0.74	+0.1
1,872,347	-		AO353_08515	0.74	+0.8
1,872,347	-		AO353_08515	0.74	+0.2
1,872,347	-		AO353_08515	0.74	-2.5
1,872,347	-		AO353_08515	0.74	+0.7
1,872,347	-		AO353_08515	0.74	-0.0
1,872,347	-		AO353_08515	0.74	+1.0
1,872,347	-		AO353_08515	0.74	+2.0
1,872,347	-		AO353_08515	0.74	+0.6
1,872,347	-		AO353_08515	0.74	-2.3
1,872,347	-		AO353_08515	0.74	-1.4
1,872,347	-		AO353_08515	0.74	-0.2
1,872,347	-		AO353_08515	0.74	+0.4
1,872,347	-		AO353_08515	0.74	-0.8
1,872,347	-		AO353_08515	0.74	+0.7
1,872,347	-		AO353_08515	0.74	+1.6
1,872,347	-		AO353_08515	0.74	+0.4
1,872,347	-		AO353_08515	0.74	-1.6
1,872,347	-		AO353_08515	0.74	+1.2
1,872,347	-		AO353_08515	0.74	-1.1
1,872,347	-		AO353_08515	0.74	-0.8
1,872,347	-		AO353_08515	0.74	+0.9
1,872,347	-		AO353_08515	0.74	+1.6
1,872,347	-		AO353_08515	0.74	-0.0
1,872,347	-		AO353_08515	0.74	-1.0
1,872,446	+				-0.4
1,872,446	+				-1.9
1,872,447	-				-1.9
1,872,447	-				+0.1
1,872,447	-				-1.9
1,872,447	-				-0.0
1,872,480	+				+2.0
1,872,480	+				+2.7
1,872,480	+				+1.6
1,872,480	+				+0.6
1,872,481	-				-1.3
1,872,481	-				-0.2
1,872,487	+				+1.8
1,872,488	-				-1.4
1,872,488	-				-2.1
1,872,538	+				+0.2
1,872,538	+				-0.0
1,872,539	-				-0.8
1,872,539	-				-0.4
1,872,539	-				+0.6
1,872,569	+				+0.1
1,872,569	+				-1.0
1,872,569	+				+0.7
1,872,570	-				+0.6
1,872,613	-				+0.8
1,872,666	+				-1.4
1,872,666	+				-0.5
1,872,666	+				+0.2
1,872,666	+				+0.8
1,872,666	+				-0.9
1,872,666	+				+1.3
1,872,666	+				+1.2
1,872,666	+				+0.9
1,872,666	+				-0.4
1,872,666	+				-2.0
1,872,667	-				+0.8
1,872,667	-				-0.6
1,872,667	-				+2.0
1,872,667	-				-1.9
1,872,854	+		AO353_08520	0.34	-0.6
1,872,854	+		AO353_08520	0.34	+0.8
1,872,855	-		AO353_08520	0.34	+1.6
1,872,855	-		AO353_08520	0.34	+0.0
1,872,855	-		AO353_08520	0.34	+0.8
1,872,855	-		AO353_08520	0.34	-0.4
1,872,855	-		AO353_08520	0.34	-2.1
1,872,876	+		AO353_08520	0.37	+1.3
1,872,876	+		AO353_08520	0.37	+0.6
1,872,876	+		AO353_08520	0.37	+0.3
1,872,876	+		AO353_08520	0.37	+1.6
1,872,876	+		AO353_08520	0.37	-0.3
1,872,876	+		AO353_08520	0.37	-0.8
1,872,876	+		AO353_08520	0.37	+0.2
1,872,876	+		AO353_08520	0.37	+0.2
1,872,876	+		AO353_08520	0.37	-0.2
1,872,876	+		AO353_08520	0.37	-1.8
1,872,876	+		AO353_08520	0.37	+0.5
1,872,876	+		AO353_08520	0.37	+1.6
1,872,876	+		AO353_08520	0.37	-0.4
1,872,876	+		AO353_08520	0.37	+0.3
1,872,876	+		AO353_08520	0.37	-1.3
1,872,877	-		AO353_08520	0.37	-1.9
1,872,877	-		AO353_08520	0.37	-0.1
1,872,877	-		AO353_08520	0.37	+0.3
1,872,877	-		AO353_08520	0.37	-0.2
1,872,877	-		AO353_08520	0.37	-0.8
1,872,877	-		AO353_08520	0.37	-0.8
1,872,877	-		AO353_08520	0.37	-0.2
1,872,877	-		AO353_08520	0.37	-1.2
1,872,877	-		AO353_08520	0.37	-0.9
1,872,877	-		AO353_08520	0.37	-2.0
1,872,877	-		AO353_08520	0.37	+1.6
1,872,877	-		AO353_08520	0.37	+0.5
1,872,877	-		AO353_08520	0.37	-0.4
1,872,877	-		AO353_08520	0.37	-1.4
1,872,877	-		AO353_08520	0.37	+1.2
1,872,877	-		AO353_08520	0.37	-0.8
1,872,923	+		AO353_08520	0.43	-1.3
1,872,923	+		AO353_08520	0.43	+0.4
1,872,923	+		AO353_08520	0.43	-0.3
1,872,923	+		AO353_08520	0.43	+0.8
1,872,923	+		AO353_08520	0.43	+0.5
1,872,923	+		AO353_08520	0.43	-0.6
1,872,923	+		AO353_08520	0.43	-0.6
1,872,923	+		AO353_08520	0.43	+0.4
1,872,923	+		AO353_08520	0.43	+0.5
1,872,923	+		AO353_08520	0.43	+0.3
1,872,923	+		AO353_08520	0.43	-1.2
1,872,923	+		AO353_08520	0.43	+1.6
1,872,924	-		AO353_08520	0.43	+0.6
1,872,924	-		AO353_08520	0.43	-2.1
1,872,924	-		AO353_08520	0.43	+0.6
1,872,924	-		AO353_08520	0.43	+0.5
1,872,924	-		AO353_08520	0.43	-0.9
1,872,924	-		AO353_08520	0.43	-1.4
1,872,924	-		AO353_08520	0.43	+0.4
1,872,925	+		AO353_08520	0.43	+1.1
1,872,925	+		AO353_08520	0.43	-1.2
1,872,925	+		AO353_08520	0.43	+0.6
1,872,925	+		AO353_08520	0.43	+2.6
1,872,925	+		AO353_08520	0.43	-0.9
1,872,925	+		AO353_08520	0.43	+0.3
1,872,925	+		AO353_08520	0.43	-0.7
1,872,925	+		AO353_08520	0.43	-2.1
1,872,925	+		AO353_08520	0.43	+0.5
1,872,925	+		AO353_08520	0.43	-1.3
1,872,925	+		AO353_08520	0.43	-0.8
1,872,925	+		AO353_08520	0.43	-2.1
1,872,926	-		AO353_08520	0.43	-0.8
1,872,926	-		AO353_08520	0.43	-0.8
1,872,926	-		AO353_08520	0.43	+1.3
1,872,926	-		AO353_08520	0.43	-0.4
1,872,926	-		AO353_08520	0.43	+0.2
1,872,926	-		AO353_08520	0.43	-0.0
1,872,926	-		AO353_08520	0.43	+1.4
1,872,926	-		AO353_08520	0.43	+0.8
1,872,926	-		AO353_08520	0.43	-0.1
1,872,926	-		AO353_08520	0.43	-1.0
1,872,926	-		AO353_08520	0.43	+0.9
1,872,926	-		AO353_08520	0.43	-0.8
1,872,926	-		AO353_08520	0.43	-1.4
1,872,929	+		AO353_08520	0.44	+1.1
1,872,929	+		AO353_08520	0.44	+0.7
1,872,929	+		AO353_08520	0.44	-0.3
1,872,929	+		AO353_08520	0.44	-1.1
1,872,929	+		AO353_08520	0.44	+1.0
1,872,930	-		AO353_08520	0.44	-0.0
1,872,930	-		AO353_08520	0.44	+0.4
1,872,930	-		AO353_08520	0.44	-0.1
1,872,930	-		AO353_08520	0.44	-1.0
1,872,930	-		AO353_08520	0.44	+0.6
1,873,060	+		AO353_08520	0.61	+0.7
1,873,060	+		AO353_08520	0.61	-0.4
1,873,060	+		AO353_08520	0.61	-0.2
1,873,060	+		AO353_08520	0.61	+2.6
1,873,061	-		AO353_08520	0.61	-0.4
1,873,061	-		AO353_08520	0.61	+0.7
1,873,061	-		AO353_08520	0.61	+0.5
1,873,077	-		AO353_08520	0.63	+2.2
1,873,158	-		AO353_08520	0.73	+1.3
1,873,158	-		AO353_08520	0.73	+0.7
1,873,186	-		AO353_08520	0.77	+1.6
1,873,186	-		AO353_08520	0.77	-0.6
1,873,244	-		AO353_08520	0.84	-1.0
1,873,368	+				-1.6
1,873,368	+				-0.2
1,873,368	+				-0.0
1,873,368	+				+1.6
1,873,368	+				-0.0
1,873,369	-				-0.2
1,873,369	-				-1.4
1,873,439	+				+0.8
1,873,439	+				-0.5
1,873,439	+				-0.0
1,873,440	-				-2.4
1,873,442	+				-0.4
1,873,442	+				-0.8
1,873,449	+				+0.1
1,873,466	+				-1.0
1,873,466	+				-1.6
1,873,467	-				-1.0
1,873,467	-				-0.4
1,873,673	+		AO353_08525	0.27	-0.8
1,873,673	+		AO353_08525	0.27	+0.2
1,873,673	+		AO353_08525	0.27	+1.6
1,873,673	+		AO353_08525	0.27	+1.6
1,873,673	+		AO353_08525	0.27	-0.8
1,873,673	+		AO353_08525	0.27	-1.0
1,873,673	+		AO353_08525	0.27	-0.0
1,873,673	+		AO353_08525	0.27	-0.6
1,873,674	-		AO353_08525	0.28	-0.8
1,873,674	-		AO353_08525	0.28	-0.6
1,873,674	-		AO353_08525	0.28	+1.6
1,873,674	-		AO353_08525	0.28	-0.8
1,873,674	-		AO353_08525	0.28	-0.8
1,873,674	-		AO353_08525	0.28	-1.5
1,873,674	-		AO353_08525	0.28	-0.4
1,873,822	-		AO353_08525	0.58	+1.3
1,874,182	+		AO353_08530	0.24	+0.6
1,874,183	-		AO353_08530	0.24	-1.6
1,874,183	-		AO353_08530	0.24	+1.2
1,874,183	-		AO353_08530	0.24	-1.1
1,874,183	-		AO353_08530	0.24	+0.3
1,874,230	+		AO353_08530	0.32	+0.3
1,874,230	+		AO353_08530	0.32	-0.4
1,874,230	+		AO353_08530	0.32	-0.8
1,874,230	+		AO353_08530	0.32	-2.4
1,874,230	+		AO353_08530	0.32	-2.2
1,874,230	+		AO353_08530	0.32	+1.0
1,874,231	-		AO353_08530	0.32	-0.8
1,874,231	-		AO353_08530	0.32	-0.5
1,874,231	-		AO353_08530	0.32	-2.4
1,874,231	-		AO353_08530	0.32	-0.6
1,874,231	-		AO353_08530	0.32	+0.4
1,874,231	-		AO353_08530	0.32	+0.7
1,874,231	-		AO353_08530	0.32	+2.6
1,874,290	+		AO353_08530	0.41	+0.6
1,874,291	-		AO353_08530	0.42	+0.3