Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07295

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
1,600,636	+		AO353_07285	0.69	+0.8
1,600,637	-		AO353_07285	0.70	-1.8
1,600,637	-		AO353_07285	0.70	+0.8
1,600,685	+		AO353_07285	0.76	+1.4
1,600,685	+		AO353_07285	0.76	+0.2
1,600,685	+		AO353_07285	0.76	-1.8
1,600,685	+		AO353_07285	0.76	+0.2
1,600,686	-		AO353_07285	0.76	+1.0
1,600,686	-		AO353_07285	0.76	-1.2
1,600,686	-		AO353_07285	0.76	+1.4
1,600,686	-		AO353_07285	0.76	-1.4
1,600,686	-		AO353_07285	0.76	+0.6
1,600,686	-		AO353_07285	0.76	+0.3
1,600,686	-		AO353_07285	0.76	+2.2
1,600,686	-		AO353_07285	0.76	-2.3
1,600,686	-		AO353_07285	0.76	+3.4
1,600,694	+		AO353_07285	0.77	+1.4
1,600,694	+		AO353_07285	0.77	+0.7
1,600,694	+		AO353_07285	0.77	-1.2
1,600,694	+		AO353_07285	0.77	-1.4
1,600,694	+		AO353_07285	0.77	+1.7
1,600,695	-		AO353_07285	0.77	-0.6
1,600,695	-		AO353_07285	0.77	-2.0
1,600,695	-		AO353_07285	0.77	-0.6
1,600,802	+				+0.3
1,600,870	+				-0.2
1,600,870	+				+0.9
1,600,870	+				+0.4
1,600,870	+				-0.4
1,600,870	+				-0.4
1,600,870	+				-0.2
1,600,870	+				-0.0
1,600,870	+				-0.2
1,600,870	+				+0.0
1,600,871	-				-0.9
1,600,871	-				+0.7
1,600,871	-				+3.3
1,600,871	-				+0.6
1,600,871	-				+0.8
1,600,871	-				+0.4
1,600,871	-				-2.2
1,600,871	-				-1.3
1,600,871	-				-1.5
1,600,871	-				+1.5
1,600,871	-				+0.3
1,600,871	-				+0.3
1,600,871	-				-0.9
1,600,871	-				-0.3
1,600,871	-				+0.4
1,600,871	-				-0.8
1,600,871	-				+1.1
1,600,876	+				-2.0
1,600,876	+				-1.8
1,600,876	+				-0.6
1,600,876	+				-2.9
1,600,877	-				+0.4
1,600,877	-				+0.6
1,600,887	+				-0.9
1,600,887	+				+0.4
1,600,888	-				+1.4
1,600,888	-				-1.2
1,600,888	-				+0.3
1,600,888	-				-1.4
1,600,888	-				+0.1
1,600,888	-				+0.7
1,600,888	-				-2.4
1,601,065	+		AO353_07290	0.29	+0.3
1,601,065	+		AO353_07290	0.29	-0.4
1,601,065	+		AO353_07290	0.29	-1.2
1,601,065	+		AO353_07290	0.29	-0.3
1,601,065	+		AO353_07290	0.29	-4.0
1,601,065	+				-0.2
1,601,065	+		AO353_07290	0.29	-1.3
1,601,065	+		AO353_07290	0.29	-1.8
1,601,065	+		AO353_07290	0.29	-1.5
1,601,065	+		AO353_07290	0.29	-1.2
1,601,065	+		AO353_07290	0.29	-0.5
1,601,065	+		AO353_07290	0.29	-1.3
1,601,065	+		AO353_07290	0.29	-1.4
1,601,065	+		AO353_07290	0.29	-0.2
1,601,065	+		AO353_07290	0.29	-1.7
1,601,066	-		AO353_07290	0.29	-1.2
1,601,066	-		AO353_07290	0.29	-1.6
1,601,066	-		AO353_07290	0.29	-0.2
1,601,066	-		AO353_07290	0.29	-2.3
1,601,066	-		AO353_07290	0.29	-1.2
1,601,066	-		AO353_07290	0.29	-1.0
1,601,081	+		AO353_07290	0.31	-0.3
1,601,209	+		AO353_07290	0.50	-2.0
1,601,222	+		AO353_07290	0.52	-3.0
1,601,222	+		AO353_07290	0.52	-1.0
1,601,222	+		AO353_07290	0.52	-1.4
1,601,222	+		AO353_07290	0.52	-1.4
1,601,223	-		AO353_07290	0.52	-1.6
1,601,223	-		AO353_07290	0.52	-2.0
1,601,223	-		AO353_07290	0.52	-1.7
1,601,223	-		AO353_07290	0.52	-0.9
1,601,223	-		AO353_07290	0.52	+1.4
1,601,223	-		AO353_07290	0.52	-0.9
1,601,223	-		AO353_07290	0.52	-2.4
1,601,356	+		AO353_07290	0.72	-2.2
1,601,356	+		AO353_07290	0.72	-2.8
1,601,356	+		AO353_07290	0.72	-0.9
1,601,356	+		AO353_07290	0.72	+0.4
1,601,357	-		AO353_07290	0.72	-3.1
1,601,357	-		AO353_07290	0.72	+0.1
1,601,357	-		AO353_07290	0.72	-2.0
1,601,438	-		AO353_07290	0.84	+1.2
1,601,627	+				-1.4
1,601,627	+				-2.6
1,601,627	+				-2.2
1,601,627	+				+0.4
1,601,627	+				+0.4
1,601,627	+				-1.4
1,601,627	+				-0.7
1,601,627	+				-1.2
1,601,627	+				-2.0
1,601,627	+				-2.5
1,601,627	+				-1.8
1,601,627	+				-2.4
1,601,627	+				-1.4
1,601,628	-				-1.2
1,601,628	-				-1.2
1,601,628	-				-1.8
1,601,628	-				-0.5
1,601,628	-				-1.2
1,601,628	-				-3.3
1,601,628	-				-1.0
1,601,628	-				-2.1
1,601,628	-				-0.3
1,601,628	-				-1.1
1,601,629	+				-0.6
1,601,629	+				-2.9
1,601,629	+				+1.4
1,601,629	+				-1.0
1,601,629	+				-1.2
1,601,629	+				+0.1
1,601,629	+				-2.6
1,601,629	+				-3.2
1,601,629	+				-1.3
1,601,629	+				+0.2
1,601,629	+				-1.0
1,601,629	+				-0.9
1,601,629	+				-1.2
1,601,629	+				-1.2
1,601,629	+				+1.1
1,601,629	+				-1.7
1,601,629	+				-2.8
1,601,629	+				+0.2
1,601,629	+				+1.0
1,601,629	+				-0.6
1,601,629	+				-2.0
1,601,629	+				-0.5
1,601,629	+				-3.0
1,601,630	-				-2.4
1,601,630	-				-0.1
1,601,630	-				-0.9
1,601,630	-				-0.5
1,601,630	-				-1.4
1,601,630	-				-1.8
1,601,630	-				-2.0
1,601,630	-				-2.3
1,601,630	-				-1.2
1,601,630	-				+0.4
1,601,630	-				-0.2
1,601,630	-				-1.6
1,601,630	-				-0.7
1,601,630	-				-1.1
1,601,630	-				-1.7
1,601,630	-				-1.4
1,601,630	-				-0.5
1,601,630	-				-2.6
1,601,630	-				-0.4
1,601,630	-				-2.6
1,601,630	-				-1.9
1,601,630	-				-0.2
1,601,631	+				-0.8
1,601,631	+				-3.0
1,601,631	+				-0.7
1,601,631	+				-0.6
1,601,631	+				+0.0
1,601,631	+				+0.2
1,601,631	+				+0.4
1,601,631	+				-2.0
1,601,631	+				-0.6
1,601,631	+				-0.3
1,601,631	+				-1.8
1,601,631	+				-0.9
1,601,631	+				-0.2
1,601,631	+				-0.4
1,601,631	+				+0.6
1,601,631	+				-1.9
1,601,631	+				-1.8
1,601,631	+				-2.2
1,601,631	+				+1.0
1,601,631	+				-1.6
1,601,631	+				-1.2
1,601,631	+				+0.1
1,601,631	+				-0.7
1,601,631	+				-1.4
1,601,631	+				+1.4
1,601,631	+				-0.2
1,601,631	+				-1.9
1,601,631	+				-2.6
1,601,631	+				-1.4
1,601,631	+				-1.0
1,601,631	+				-1.0
1,601,631	+				-0.7
1,601,632	-				+1.4
1,601,632	-				-0.2
1,601,632	-				-0.6
1,601,632	-				-1.4
1,601,632	-				-4.2
1,601,632	-				-2.5
1,601,632	-				-3.7
1,601,632	-				-1.4
1,601,632	-				-0.9
1,601,632	-				-3.2
1,601,632	-				-1.8
1,601,632	-				-1.4
1,601,632	-				-1.9
1,601,632	-				-0.8
1,601,632	-				-1.1
1,601,632	-				-1.9
1,601,632	-				+0.0
1,601,783	-		AO353_07295	0.24	-0.9
1,601,808	+		AO353_07295	0.26	-0.2
1,601,808	+		AO353_07295	0.26	-0.8
1,601,808	+		AO353_07295	0.26	-0.2
1,601,809	-		AO353_07295	0.26	-0.6
1,601,809	-		AO353_07295	0.26	+0.4
1,601,809	-		AO353_07295	0.26	-2.0
1,601,809	-		AO353_07295	0.26	-1.5
1,601,809	-		AO353_07295	0.26	-3.0
1,601,809	-		AO353_07295	0.26	+0.2
1,601,809	-		AO353_07295	0.26	-3.9
1,601,883	+		AO353_07295	0.33	-0.2
1,601,883	+		AO353_07295	0.33	-0.2
1,601,883	+		AO353_07295	0.33	+0.4
1,601,883	+		AO353_07295	0.33	-2.6
1,601,883	+		AO353_07295	0.33	-1.9
1,601,883	+		AO353_07295	0.33	-2.7
1,601,883	+		AO353_07295	0.33	-1.5
1,601,883	+		AO353_07295	0.33	-0.7
1,601,883	+		AO353_07295	0.33	-2.9
1,601,883	+		AO353_07295	0.33	+1.4
1,601,883	+		AO353_07295	0.33	-0.2
1,601,884	-		AO353_07295	0.34	-0.8
1,601,884	-		AO353_07295	0.34	-2.2
1,601,884	-		AO353_07295	0.34	-1.2
1,601,884	-		AO353_07295	0.34	-0.2
1,601,884	-		AO353_07295	0.34	-1.9
1,601,884	-		AO353_07295	0.34	-2.2
1,601,884	-		AO353_07295	0.34	-1.9
1,601,884	-		AO353_07295	0.34	-0.2
1,601,884	-		AO353_07295	0.34	-0.6
1,601,884	-		AO353_07295	0.34	-1.6
1,601,884	-		AO353_07295	0.34	-1.0
1,601,899	-		AO353_07295	0.35	-0.6
1,601,964	+		AO353_07295	0.41	-1.8
1,601,964	+		AO353_07295	0.41	-1.7
1,601,964	+		AO353_07295	0.41	-2.8
1,601,964	+		AO353_07295	0.41	-1.7
1,601,964	+		AO353_07295	0.41	-0.2
1,601,964	+		AO353_07295	0.41	-1.5
1,601,964	+		AO353_07295	0.41	-3.0
1,601,964	+		AO353_07295	0.41	-3.5
1,601,964	+		AO353_07295	0.41	-0.6
1,601,964	+		AO353_07295	0.41	-2.6
1,601,965	-		AO353_07295	0.41	-0.5
1,601,965	-		AO353_07295	0.41	-2.8
1,601,965	-		AO353_07295	0.41	+0.4
1,601,965	-		AO353_07295	0.41	+1.8
1,601,965	-		AO353_07295	0.41	-1.5
1,601,965	-		AO353_07295	0.41	-2.8
1,602,084	+		AO353_07295	0.53	-1.6
1,602,084	+		AO353_07295	0.53	-1.7
1,602,084	+		AO353_07295	0.53	-0.7
1,602,085	-		AO353_07295	0.53	+0.6
1,602,085	-		AO353_07295	0.53	-2.7
1,602,085	-		AO353_07295	0.53	-0.6
1,602,085	-		AO353_07295	0.53	-1.0
1,602,085	-		AO353_07295	0.53	-1.0
1,602,132	+		AO353_07295	0.58	-1.4
1,602,132	+		AO353_07295	0.58	+0.0
1,602,132	+		AO353_07295	0.58	-1.0
1,602,132	+		AO353_07295	0.58	-2.2
1,602,132	+		AO353_07295	0.58	-0.2
1,602,132	+		AO353_07295	0.58	-1.8
1,602,132	+		AO353_07295	0.58	-0.8
1,602,132	+		AO353_07295	0.58	-0.6
1,602,132	+		AO353_07295	0.58	-2.0
1,602,132	+		AO353_07295	0.58	-1.2
1,602,133	-		AO353_07295	0.58	-1.2
1,602,133	-		AO353_07295	0.58	-1.6
1,602,133	-		AO353_07295	0.58	-3.2
1,602,237	+		AO353_07295	0.68	-0.2
1,602,237	+		AO353_07295	0.68	-1.2
1,602,237	+		AO353_07295	0.68	-1.6
1,602,237	+		AO353_07295	0.68	-1.4
1,602,237	+		AO353_07295	0.68	-0.4
1,602,237	+		AO353_07295	0.68	-0.4
1,602,237	+		AO353_07295	0.68	-1.0
1,602,238	-		AO353_07295	0.68	-2.0
1,602,238	-		AO353_07295	0.68	-1.5
1,602,238	-		AO353_07295	0.68	+0.4
1,602,238	-		AO353_07295	0.68	-0.1
1,602,238	-		AO353_07295	0.68	-2.3
1,602,295	-		AO353_07295	0.74	-0.1
1,602,310	+		AO353_07295	0.75	+0.4
1,602,310	+		AO353_07295	0.75	-1.9
1,602,311	-		AO353_07295	0.75	-2.2
1,602,400	+		AO353_07295	0.84	+1.4
1,602,400	+		AO353_07295	0.84	-1.1
1,602,400	+		AO353_07295	0.84	-3.7
1,602,400	+		AO353_07295	0.84	-1.3
1,602,400	+		AO353_07295	0.84	+0.3
1,602,400	+		AO353_07295	0.84	-0.7
1,602,400	+		AO353_07295	0.84	-0.7
1,602,401	-		AO353_07295	0.84	+0.4
1,602,401	-		AO353_07295	0.84	-0.7
1,602,401	-		AO353_07295	0.84	-0.8
1,602,401	-		AO353_07295	0.84	-1.2
1,602,401	-		AO353_07295	0.84	-2.3
1,602,401	-		AO353_07295	0.84	-2.8
1,602,401	-		AO353_07295	0.84	-1.1
1,602,401	-		AO353_07295	0.84	-1.6
1,602,401	-		AO353_07295	0.84	-0.4
1,602,423	+		AO353_07295	0.86	-0.6
1,602,424	-		AO353_07295	0.86	-1.2
1,602,548	+				-0.8
1,602,548	+				+0.8
1,602,548	+				-2.3
1,602,548	+				-2.9
1,602,548	+				-1.9
1,602,548	+				-1.2
1,602,548	+				+0.4
1,602,548	+				+0.6
1,602,549	-				-0.9
1,602,549	-				+0.5
1,602,549	-				+1.2
1,602,549	-				-0.4
1,602,549	-				+1.4
1,602,549	-				+1.4
1,602,549	-				-0.2
1,602,549	-				+0.2
1,602,549	-				-1.9
1,602,549	-				-1.0
1,602,549	-				-0.8
1,602,549	-				-1.0
1,602,549	-				-0.7
1,602,549	-				+3.0
1,602,549	-				+0.2
1,602,549	-				+0.7
1,602,566	+				-1.3
1,602,566	+				-2.2
1,602,566	+				-2.6
1,602,566	+				+0.0
1,602,566	+				-1.2
1,602,566	+				+2.3
1,602,566	+				-1.6
1,602,566	+				-0.4
1,602,566	+				-1.3
1,602,566	+				-0.9
1,602,566	+				-1.9
1,602,566	+				-0.8
1,602,567	-				-2.4
1,602,567	-				+0.0
1,602,567	-				-1.0
1,602,567	-				-1.6
1,602,567	-				+0.8
1,602,567	-				+2.4
1,602,567	-				-0.2
1,602,567	-				-1.6
1,602,567	-				+1.3
1,602,610	+				+1.3
1,602,610	+				+0.7
1,602,610	+				-0.0
1,602,610	+				+0.1
1,602,610	+				-1.8
1,602,610	+				+0.1