Experiment: N1B4wt with N2E3m denitrifying replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06725 and AO353_06730 overlap by 4 nucleotides AO353_06730 and AO353_06735 are separated by 246 nucleotides AO353_06735 and AO353_06740 overlap by 4 nucleotides AO353_06740 and AO353_06745 are separated by 133 nucleotides
AO353_06725: AO353_06725 - hypothetical protein, at 1,496,375 to 1,496,836
_06725
AO353_06730: AO353_06730 - methyltransferase, at 1,496,833 to 1,497,489
_06730
AO353_06735: AO353_06735 - thioredoxin, at 1,497,736 to 1,498,608
_06735
AO353_06740: AO353_06740 - hypothetical protein, at 1,498,605 to 1,498,964
_06740
AO353_06745: AO353_06745 - zinc-binding protein, at 1,499,098 to 1,499,709
_06745
Position (kb) 1497
1498
1499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1496.864 kb on + strand at 1496.865 kb on - strand at 1497.004 kb on + strand, within AO353_06730 at 1497.004 kb on + strand, within AO353_06730 at 1497.005 kb on - strand, within AO353_06730 at 1497.005 kb on - strand, within AO353_06730 at 1497.005 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.292 kb on + strand, within AO353_06730 at 1497.293 kb on - strand, within AO353_06730 at 1497.293 kb on - strand, within AO353_06730 at 1497.391 kb on + strand, within AO353_06730 at 1497.391 kb on + strand, within AO353_06730 at 1497.391 kb on + strand, within AO353_06730 at 1497.391 kb on + strand, within AO353_06730 at 1497.392 kb on - strand, within AO353_06730 at 1497.392 kb on - strand, within AO353_06730 at 1497.469 kb on + strand at 1497.470 kb on - strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.483 kb on + strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.484 kb on - strand at 1497.598 kb on - strand at 1497.598 kb on - strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.670 kb on + strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.671 kb on - strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.674 kb on + strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.675 kb on - strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.678 kb on + strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.679 kb on - strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.700 kb on + strand at 1497.701 kb on - strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.702 kb on + strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.703 kb on - strand at 1497.754 kb on + strand at 1497.754 kb on + strand at 1497.754 kb on + strand at 1497.754 kb on + strand at 1497.755 kb on - strand at 1497.755 kb on - strand at 1497.755 kb on - strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.756 kb on + strand at 1497.757 kb on - strand at 1497.757 kb on - strand at 1497.757 kb on - strand at 1497.757 kb on - strand at 1497.771 kb on + strand at 1497.898 kb on + strand, within AO353_06735 at 1497.898 kb on + strand, within AO353_06735 at 1497.898 kb on + strand, within AO353_06735 at 1497.898 kb on + strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1497.899 kb on - strand, within AO353_06735 at 1498.073 kb on + strand, within AO353_06735 at 1498.073 kb on + strand, within AO353_06735 at 1498.074 kb on - strand, within AO353_06735 at 1498.074 kb on - strand, within AO353_06735 at 1498.074 kb on - strand, within AO353_06735 at 1498.074 kb on - strand, within AO353_06735 at 1498.188 kb on + strand, within AO353_06735 at 1498.188 kb on + strand, within AO353_06735 at 1498.189 kb on - strand, within AO353_06735 at 1498.189 kb on - strand, within AO353_06735 at 1498.189 kb on - strand, within AO353_06735 at 1498.411 kb on + strand, within AO353_06735 at 1498.412 kb on - strand, within AO353_06735 at 1498.412 kb on - strand, within AO353_06735 at 1498.447 kb on + strand, within AO353_06735 at 1498.447 kb on + strand, within AO353_06735 at 1498.447 kb on + strand, within AO353_06735 at 1498.448 kb on - strand, within AO353_06735 at 1498.448 kb on - strand, within AO353_06735 at 1498.448 kb on - strand, within AO353_06735 at 1498.448 kb on - strand, within AO353_06735 at 1498.498 kb on + strand, within AO353_06735 at 1498.498 kb on + strand, within AO353_06735 at 1498.499 kb on - strand, within AO353_06735 at 1498.499 kb on - strand, within AO353_06735 at 1498.499 kb on - strand, within AO353_06735 at 1498.499 kb on - strand, within AO353_06735 at 1498.577 kb on - strand at 1498.577 kb on - strand at 1498.603 kb on + strand at 1498.603 kb on + strand at 1498.603 kb on + strand at 1498.603 kb on + strand at 1498.604 kb on - strand at 1498.604 kb on - strand at 1498.604 kb on - strand at 1498.604 kb on - strand at 1498.606 kb on + strand at 1498.606 kb on + strand at 1498.606 kb on + strand at 1498.607 kb on - strand at 1498.607 kb on - strand at 1498.607 kb on - strand at 1498.607 kb on - strand at 1498.607 kb on - strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.625 kb on + strand at 1498.626 kb on - strand at 1498.626 kb on - strand at 1498.626 kb on - strand at 1498.626 kb on - strand at 1498.626 kb on - strand at 1498.626 kb on - strand at 1498.626 kb on - strand at 1498.626 kb on - strand at 1498.626 kb on - strand at 1498.626 kb on - strand at 1498.627 kb on + strand at 1498.627 kb on + strand at 1498.627 kb on + strand at 1498.627 kb on + strand at 1498.627 kb on + strand at 1498.627 kb on + strand at 1498.628 kb on - strand at 1498.628 kb on - strand at 1498.628 kb on - strand at 1498.628 kb on - strand at 1498.628 kb on - strand at 1498.671 kb on - strand, within AO353_06740 at 1498.866 kb on + strand, within AO353_06740 at 1498.982 kb on + strand at 1498.982 kb on + strand at 1498.982 kb on + strand at 1498.982 kb on + strand at 1498.983 kb on - strand at 1499.053 kb on - strand at 1499.059 kb on - strand at 1499.111 kb on + strand at 1499.402 kb on + strand, within AO353_06745 at 1499.403 kb on - strand, within AO353_06745 at 1499.548 kb on + strand, within AO353_06745 at 1499.548 kb on + strand, within AO353_06745
Per-strain Table
Position Strand Gene LocusTag Fraction N1B4wt with N2E3m denitrifying replicate C remove 1,496,864 + -1.0 1,496,865 - +1.1 1,497,004 + AO353_06730 0.26 -1.4 1,497,004 + AO353_06730 0.26 +0.9 1,497,005 - AO353_06730 0.26 +0.3 1,497,005 - AO353_06730 0.26 +1.1 1,497,005 - AO353_06730 0.26 -1.2 1,497,230 - AO353_06730 0.60 +1.0 1,497,230 - AO353_06730 0.60 +4.0 1,497,230 - AO353_06730 0.60 -0.1 1,497,230 - AO353_06730 0.60 +2.4 1,497,292 + AO353_06730 0.70 +0.7 1,497,292 + AO353_06730 0.70 +1.0 1,497,292 + AO353_06730 0.70 +0.9 1,497,292 + AO353_06730 0.70 -0.5 1,497,292 + AO353_06730 0.70 +0.6 1,497,292 + AO353_06730 0.70 -1.2 1,497,293 - AO353_06730 0.70 -1.4 1,497,293 - AO353_06730 0.70 +0.1 1,497,391 + AO353_06730 0.85 -0.2 1,497,391 + AO353_06730 0.85 +0.2 1,497,391 + AO353_06730 0.85 -1.3 1,497,391 + AO353_06730 0.85 -0.2 1,497,392 - AO353_06730 0.85 -2.2 1,497,392 - AO353_06730 0.85 -0.8 1,497,469 + +0.3 1,497,470 - +0.5 1,497,483 + +0.5 1,497,483 + -0.9 1,497,483 + -1.9 1,497,483 + -1.6 1,497,483 + +3.0 1,497,483 + -0.4 1,497,483 + +1.4 1,497,483 + +1.4 1,497,483 + -0.9 1,497,483 + -0.8 1,497,483 + +0.5 1,497,484 - -1.6 1,497,484 - +0.7 1,497,484 - +2.0 1,497,484 - +0.6 1,497,484 - -0.6 1,497,484 - -0.9 1,497,484 - +0.7 1,497,484 - -0.1 1,497,598 - +0.8 1,497,598 - +0.8 1,497,670 + -1.0 1,497,670 + +1.5 1,497,670 + -1.6 1,497,670 + +1.4 1,497,670 + -0.1 1,497,670 + -1.4 1,497,670 + -0.6 1,497,670 + -1.6 1,497,670 + +0.5 1,497,671 - +2.0 1,497,671 - +0.5 1,497,671 - +0.8 1,497,671 - -1.2 1,497,671 - +0.7 1,497,671 - +0.5 1,497,671 - +0.5 1,497,674 + -1.4 1,497,674 + -0.7 1,497,674 + +1.1 1,497,674 + -1.2 1,497,674 + -0.7 1,497,674 + -0.3 1,497,674 + -1.5 1,497,674 + +0.6 1,497,674 + +1.0 1,497,674 + +0.2 1,497,674 + -1.3 1,497,674 + -0.8 1,497,674 + +0.0 1,497,674 + -0.4 1,497,674 + +1.0 1,497,674 + -0.1 1,497,674 + +0.3 1,497,675 - -1.9 1,497,675 - -1.8 1,497,675 - +1.1 1,497,675 - +0.2 1,497,675 - -1.8 1,497,675 - -0.2 1,497,675 - -0.4 1,497,675 - +0.4 1,497,675 - -0.6 1,497,675 - +1.0 1,497,675 - +0.9 1,497,675 - -1.8 1,497,675 - -0.2 1,497,675 - -1.0 1,497,675 - -0.4 1,497,675 - -2.4 1,497,675 - +0.4 1,497,675 - -0.6 1,497,678 + -1.0 1,497,678 + +0.5 1,497,678 + -0.6 1,497,678 + -0.5 1,497,678 + -0.2 1,497,678 + -2.9 1,497,678 + +0.7 1,497,678 + +1.7 1,497,678 + +1.0 1,497,678 + +0.1 1,497,678 + +1.4 1,497,678 + -1.3 1,497,678 + -0.6 1,497,678 + +1.4 1,497,678 + -1.9 1,497,678 + +0.8 1,497,678 + +2.0 1,497,678 + -1.6 1,497,678 + -0.0 1,497,679 - +0.4 1,497,679 - +0.8 1,497,679 - -0.6 1,497,679 - -0.4 1,497,679 - +1.0 1,497,679 - -1.4 1,497,679 - +0.0 1,497,679 - -0.2 1,497,679 - -0.0 1,497,679 - -0.4 1,497,679 - -1.0 1,497,679 - -0.2 1,497,679 - -1.0 1,497,679 - +2.2 1,497,679 - +0.6 1,497,679 - +0.4 1,497,679 - +1.4 1,497,679 - +0.8 1,497,700 + +2.0 1,497,700 + -0.6 1,497,700 + +0.8 1,497,700 + -1.7 1,497,700 + +2.6 1,497,700 + -0.2 1,497,700 + -0.4 1,497,700 + +1.1 1,497,701 - -2.0 1,497,702 + -1.9 1,497,702 + -1.0 1,497,702 + +0.4 1,497,702 + -0.4 1,497,702 + -2.1 1,497,702 + +2.0 1,497,702 + +0.3 1,497,702 + +1.1 1,497,702 + +0.6 1,497,702 + -1.2 1,497,702 + +0.4 1,497,702 + -1.4 1,497,702 + +0.6 1,497,702 + +0.2 1,497,702 + -0.0 1,497,702 + -1.1 1,497,702 + +1.4 1,497,702 + +1.4 1,497,702 + +0.3 1,497,703 - +0.5 1,497,703 - -0.6 1,497,703 - -2.0 1,497,703 - +1.0 1,497,703 - -2.2 1,497,703 - -1.6 1,497,703 - +0.4 1,497,703 - +0.4 1,497,703 - +0.4 1,497,703 - +1.4 1,497,703 - +0.4 1,497,703 - +0.3 1,497,703 - +1.0 1,497,703 - -1.6 1,497,703 - +1.4 1,497,703 - +0.2 1,497,754 + +0.9 1,497,754 + +1.7 1,497,754 + -0.1 1,497,754 + +0.0 1,497,755 - +0.8 1,497,755 - -0.4 1,497,755 - -1.8 1,497,756 + +1.0 1,497,756 + -0.2 1,497,756 + -1.8 1,497,756 + -2.0 1,497,756 + -2.2 1,497,756 + +0.8 1,497,756 + -0.5 1,497,756 + +0.0 1,497,757 - -1.2 1,497,757 - +0.4 1,497,757 - +2.4 1,497,757 - +1.3 1,497,771 + +0.0 1,497,898 + AO353_06735 0.19 +0.4 1,497,898 + AO353_06735 0.19 -1.2 1,497,898 + AO353_06735 0.19 +0.0 1,497,898 + AO353_06735 0.19 +0.2 1,497,899 - AO353_06735 0.19 +0.7 1,497,899 - AO353_06735 0.19 +1.2 1,497,899 - AO353_06735 0.19 +0.4 1,497,899 - AO353_06735 0.19 +1.8 1,497,899 - AO353_06735 0.19 +1.3 1,497,899 - AO353_06735 0.19 -1.6 1,497,899 - AO353_06735 0.19 +1.0 1,497,899 - AO353_06735 0.19 -0.6 1,497,899 - AO353_06735 0.19 +0.4 1,498,073 + AO353_06735 0.39 -1.0 1,498,073 + AO353_06735 0.39 +1.4 1,498,074 - AO353_06735 0.39 +0.1 1,498,074 - AO353_06735 0.39 +1.2 1,498,074 - AO353_06735 0.39 -0.6 1,498,074 - AO353_06735 0.39 -1.6 1,498,188 + AO353_06735 0.52 -1.0 1,498,188 + AO353_06735 0.52 -1.0 1,498,189 - AO353_06735 0.52 +0.0 1,498,189 - AO353_06735 0.52 -1.4 1,498,189 - AO353_06735 0.52 -1.0 1,498,411 + AO353_06735 0.77 -0.4 1,498,412 - AO353_06735 0.77 -0.6 1,498,412 - AO353_06735 0.77 -1.4 1,498,447 + AO353_06735 0.81 +0.6 1,498,447 + AO353_06735 0.81 +0.6 1,498,447 + AO353_06735 0.81 -0.2 1,498,448 - AO353_06735 0.82 -0.2 1,498,448 - AO353_06735 0.82 +1.4 1,498,448 - AO353_06735 0.82 -1.4 1,498,448 - AO353_06735 0.82 +1.5 1,498,498 + AO353_06735 0.87 +0.4 1,498,498 + AO353_06735 0.87 +1.4 1,498,499 - AO353_06735 0.87 +1.4 1,498,499 - AO353_06735 0.87 +1.1 1,498,499 - AO353_06735 0.87 +1.4 1,498,499 - AO353_06735 0.87 -0.2 1,498,577 - -1.6 1,498,577 - +2.8 1,498,603 + -2.0 1,498,603 + -0.5 1,498,603 + +1.8 1,498,603 + +0.0 1,498,604 - +1.5 1,498,604 - +1.1 1,498,604 - -1.0 1,498,604 - -1.0 1,498,606 + -0.0 1,498,606 + +0.4 1,498,606 + -0.3 1,498,607 - +1.4 1,498,607 - -0.2 1,498,607 - +0.2 1,498,607 - -0.0 1,498,607 - -0.6 1,498,625 + -0.7 1,498,625 + +3.4 1,498,625 + +0.9 1,498,625 + -0.2 1,498,625 + +0.6 1,498,625 + -0.9 1,498,625 + -1.8 1,498,625 + -0.6 1,498,625 + -0.7 1,498,625 + -1.0 1,498,625 + -1.4 1,498,626 - +0.0 1,498,626 - -1.6 1,498,626 - +0.6 1,498,626 - -0.1 1,498,626 - +0.6 1,498,626 - +0.8 1,498,626 - -0.2 1,498,626 - +0.2 1,498,626 - -0.6 1,498,626 - +0.9 1,498,627 + +0.4 1,498,627 + -0.0 1,498,627 + -1.2 1,498,627 + -0.2 1,498,627 + +0.9 1,498,627 + +0.2 1,498,628 - -0.2 1,498,628 - +1.6 1,498,628 - -0.4 1,498,628 - +0.9 1,498,628 - -2.2 1,498,671 - AO353_06740 0.18 +0.6 1,498,866 + AO353_06740 0.72 +1.4 1,498,982 + -0.1 1,498,982 + +0.1 1,498,982 + -1.4 1,498,982 + +1.0 1,498,983 - -0.6 1,499,053 - -0.3 1,499,059 - -3.2 1,499,111 + -2.1 1,499,402 + AO353_06745 0.50 +0.2 1,499,403 - AO353_06745 0.50 -0.8 1,499,548 + AO353_06745 0.74 +0.6 1,499,548 + AO353_06745 0.74 -0.9
Or see this region's nucleotide sequence