Experiment: N1B4wt with N2E3m denitrifying replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03600 and AO353_03605 are separated by 108 nucleotides AO353_03605 and AO353_03610 are separated by 167 nucleotides
AO353_03600: AO353_03600 - aspartate--tRNA(Asp/Asn) ligase, at 768,265 to 770,040
_03600
AO353_03605: AO353_03605 - FmdB family transcriptional regulator, at 770,149 to 770,370
_03605
AO353_03610: AO353_03610 - arylsulfate sulfotransferase, at 770,538 to 770,873
_03610
Position (kb) 770
771 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 770.062 kb on - strand at 770.108 kb on - strand at 770.108 kb on - strand at 770.151 kb on - strand at 770.151 kb on - strand at 770.211 kb on - strand, within AO353_03605 at 770.355 kb on - strand at 770.355 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.361 kb on - strand at 770.394 kb on - strand at 770.394 kb on - strand at 770.436 kb on - strand at 770.436 kb on - strand at 770.436 kb on - strand at 770.436 kb on - strand at 770.436 kb on - strand at 770.436 kb on - strand at 770.436 kb on - strand at 770.436 kb on - strand at 770.438 kb on - strand at 770.445 kb on - strand at 770.550 kb on - strand at 770.550 kb on - strand at 770.574 kb on + strand, within AO353_03610 at 770.574 kb on + strand, within AO353_03610 at 770.574 kb on + strand, within AO353_03610 at 770.574 kb on + strand, within AO353_03610 at 770.575 kb on - strand, within AO353_03610 at 770.575 kb on - strand, within AO353_03610 at 770.642 kb on + strand, within AO353_03610 at 770.642 kb on + strand, within AO353_03610 at 770.642 kb on + strand, within AO353_03610 at 770.643 kb on - strand, within AO353_03610 at 770.643 kb on - strand, within AO353_03610 at 770.651 kb on - strand, within AO353_03610 at 770.651 kb on - strand, within AO353_03610 at 770.651 kb on - strand, within AO353_03610 at 770.651 kb on - strand, within AO353_03610 at 770.713 kb on + strand, within AO353_03610 at 770.713 kb on + strand, within AO353_03610 at 770.713 kb on + strand, within AO353_03610 at 770.714 kb on - strand, within AO353_03610 at 770.714 kb on - strand, within AO353_03610 at 770.714 kb on - strand, within AO353_03610 at 770.885 kb on + strand at 770.886 kb on - strand at 770.886 kb on - strand at 770.886 kb on - strand at 770.886 kb on - strand at 770.886 kb on - strand at 770.886 kb on - strand at 770.907 kb on + strand at 770.907 kb on + strand at 770.907 kb on + strand at 770.908 kb on - strand at 770.908 kb on - strand at 770.908 kb on - strand at 770.908 kb on - strand at 770.908 kb on - strand at 770.908 kb on - strand at 770.908 kb on - strand at 770.944 kb on + strand at 770.944 kb on + strand at 770.945 kb on - strand at 770.945 kb on - strand at 770.945 kb on - strand at 770.945 kb on - strand at 770.945 kb on - strand at 770.945 kb on - strand at 770.945 kb on - strand at 770.960 kb on + strand at 770.960 kb on + strand at 770.961 kb on - strand at 770.964 kb on + strand at 770.964 kb on + strand at 770.964 kb on + strand at 770.964 kb on + strand at 770.964 kb on + strand at 770.964 kb on + strand at 770.964 kb on + strand at 770.964 kb on + strand at 770.964 kb on + strand at 770.965 kb on - strand at 770.965 kb on - strand at 770.965 kb on - strand at 770.965 kb on - strand at 770.965 kb on - strand at 770.965 kb on - strand at 770.965 kb on - strand at 770.965 kb on - strand at 770.965 kb on - strand at 770.966 kb on + strand at 770.980 kb on + strand at 770.980 kb on + strand at 770.980 kb on + strand at 770.980 kb on + strand at 770.980 kb on + strand at 770.980 kb on + strand at 770.981 kb on - strand at 770.981 kb on - strand at 770.981 kb on - strand at 770.981 kb on - strand at 770.981 kb on - strand at 770.981 kb on - strand at 770.994 kb on + strand at 770.994 kb on + strand at 770.994 kb on + strand at 770.994 kb on + strand at 770.995 kb on - strand at 770.995 kb on - strand at 770.995 kb on - strand at 771.025 kb on + strand at 771.026 kb on - strand at 771.036 kb on + strand at 771.036 kb on + strand at 771.036 kb on + strand at 771.036 kb on + strand at 771.036 kb on + strand at 771.036 kb on + strand at 771.036 kb on + strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.037 kb on - strand at 771.046 kb on + strand at 771.047 kb on - strand at 771.049 kb on - strand at 771.049 kb on - strand at 771.093 kb on + strand at 771.094 kb on - strand at 771.207 kb on + strand at 771.207 kb on + strand at 771.207 kb on + strand at 771.208 kb on - strand at 771.208 kb on - strand at 771.209 kb on + strand at 771.209 kb on + strand at 771.209 kb on + strand at 771.209 kb on + strand at 771.209 kb on + strand at 771.209 kb on + strand at 771.210 kb on - strand at 771.210 kb on - strand at 771.210 kb on - strand at 771.288 kb on - strand at 771.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N1B4wt with N2E3m denitrifying replicate C remove 770,062 - +0.1 770,108 - +1.9 770,108 - -0.9 770,151 - +1.7 770,151 - -1.4 770,211 - AO353_03605 0.28 -1.2 770,355 - -0.0 770,355 - -1.2 770,361 - +0.3 770,361 - -0.4 770,361 - +0.7 770,361 - -0.2 770,361 - +2.1 770,361 - -0.1 770,361 - -0.7 770,361 - +0.1 770,361 - +0.4 770,361 - +0.1 770,361 - -0.2 770,394 - +0.3 770,394 - +1.1 770,436 - -0.4 770,436 - -1.2 770,436 - +0.6 770,436 - +0.1 770,436 - -0.2 770,436 - -0.4 770,436 - +1.1 770,436 - +3.1 770,438 - +0.5 770,445 - -0.2 770,550 - -0.4 770,550 - +1.1 770,574 + AO353_03610 0.11 -2.2 770,574 + AO353_03610 0.11 -0.6 770,574 + AO353_03610 0.11 -1.2 770,574 + AO353_03610 0.11 +3.1 770,575 - AO353_03610 0.11 +0.8 770,575 - AO353_03610 0.11 +0.6 770,642 + AO353_03610 0.31 +0.7 770,642 + AO353_03610 0.31 +1.0 770,642 + AO353_03610 0.31 -1.4 770,643 - AO353_03610 0.31 +0.4 770,643 - AO353_03610 0.31 -0.9 770,651 - AO353_03610 0.34 +0.9 770,651 - AO353_03610 0.34 +0.9 770,651 - AO353_03610 0.34 +2.9 770,651 - AO353_03610 0.34 +0.4 770,713 + AO353_03610 0.52 +0.3 770,713 + AO353_03610 0.52 -0.9 770,713 + AO353_03610 0.52 -0.9 770,714 - AO353_03610 0.52 -0.3 770,714 - AO353_03610 0.52 -0.5 770,714 - AO353_03610 0.52 -0.1 770,885 + +1.1 770,886 - +1.0 770,886 - -1.3 770,886 - -0.2 770,886 - -0.9 770,886 - -0.5 770,886 - +0.4 770,907 + -1.2 770,907 + +1.1 770,907 + +1.0 770,908 - -0.9 770,908 - -1.2 770,908 - -0.9 770,908 - +0.7 770,908 - -1.4 770,908 - +1.3 770,908 - +1.7 770,944 + -0.2 770,944 + +0.4 770,945 - -0.6 770,945 - -0.9 770,945 - -2.0 770,945 - +0.1 770,945 - -1.9 770,945 - +0.6 770,945 - +1.7 770,960 + -2.1 770,960 + -0.4 770,961 - +0.8 770,964 + +0.6 770,964 + -1.0 770,964 + +0.9 770,964 + +1.6 770,964 + -0.9 770,964 + +2.1 770,964 + -0.3 770,964 + -0.4 770,964 + -1.7 770,965 - -1.4 770,965 - -1.6 770,965 - +0.1 770,965 - +0.5 770,965 - -0.9 770,965 - +0.1 770,965 - -0.2 770,965 - -0.7 770,965 - +0.6 770,966 + -0.1 770,980 + +0.2 770,980 + +1.1 770,980 + +0.2 770,980 + +0.5 770,980 + -1.2 770,980 + +0.1 770,981 - +0.4 770,981 - +1.1 770,981 - -1.0 770,981 - +0.8 770,981 - -0.7 770,981 - +1.6 770,994 + -1.7 770,994 + +0.3 770,994 + +0.6 770,994 + -0.9 770,995 - -0.9 770,995 - +1.9 770,995 - +0.1 771,025 + -2.0 771,026 - -0.2 771,036 + -0.7 771,036 + +1.7 771,036 + +0.3 771,036 + +1.1 771,036 + +0.1 771,036 + -0.2 771,036 + -1.1 771,037 - +0.7 771,037 - +1.4 771,037 - +0.1 771,037 - -0.7 771,037 - -0.9 771,037 - -0.1 771,037 - +1.1 771,037 - +0.6 771,037 - +0.4 771,037 - +0.6 771,037 - +0.7 771,037 - +1.6 771,037 - -0.0 771,046 + -0.9 771,047 - -0.3 771,049 - +0.0 771,049 - +0.1 771,093 + +0.9 771,094 - +0.1 771,207 + -2.5 771,207 + -1.0 771,207 + -2.3 771,208 - +0.1 771,208 - +1.5 771,209 + -0.3 771,209 + -0.4 771,209 + +0.3 771,209 + +0.4 771,209 + -0.5 771,209 + +1.1 771,210 - -1.2 771,210 - +0.1 771,210 - -1.8 771,288 - -1.7 771,288 - +0.1
Or see this region's nucleotide sequence