Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02075

Experiment: N1B4wt with N2E3m denitrifying replicate C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02070 and AO353_02075 overlap by 1 nucleotidesAO353_02075 and AO353_02080 are separated by 64 nucleotides AO353_02070: AO353_02070 - prephenate dehydratase, at 441,111 to 442,205 _02070 AO353_02075: AO353_02075 - 3-phosphoserine/phosphohydroxythreonine aminotransferase, at 442,205 to 443,290 _02075 AO353_02080: AO353_02080 - DNA gyrase subunit A, at 443,355 to 446,024 _02080 Position (kb) 442 443 444Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 441.235 kb on + strand, within AO353_02070at 441.235 kb on + strand, within AO353_02070at 441.235 kb on + strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.236 kb on - strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.466 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.625 kb on + strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.626 kb on - strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.707 kb on + strand, within AO353_02070at 441.708 kb on - strand, within AO353_02070at 441.913 kb on + strand, within AO353_02070at 442.055 kb on - strand, within AO353_02070at 442.055 kb on - strand, within AO353_02070at 442.085 kb on + strand, within AO353_02070at 442.095 kb on + strand, within AO353_02070at 442.095 kb on + strand, within AO353_02070at 442.236 kb on + strandat 442.236 kb on + strandat 442.236 kb on + strandat 442.236 kb on + strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.237 kb on - strandat 442.278 kb on + strandat 442.278 kb on + strandat 442.278 kb on + strandat 442.278 kb on + strandat 442.278 kb on + strandat 442.279 kb on - strandat 442.279 kb on - strandat 442.283 kb on - strandat 442.283 kb on - strandat 442.283 kb on - strandat 442.437 kb on + strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.438 kb on - strand, within AO353_02075at 442.464 kb on + strand, within AO353_02075at 442.464 kb on + strand, within AO353_02075at 442.465 kb on - strand, within AO353_02075at 442.554 kb on + strand, within AO353_02075at 442.554 kb on + strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.555 kb on - strand, within AO353_02075at 442.581 kb on + strand, within AO353_02075at 442.581 kb on + strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.582 kb on - strand, within AO353_02075at 442.611 kb on + strand, within AO353_02075at 442.611 kb on + strand, within AO353_02075at 442.612 kb on - strand, within AO353_02075at 442.612 kb on - strand, within AO353_02075at 442.612 kb on - strand, within AO353_02075at 442.716 kb on + strand, within AO353_02075at 442.717 kb on - strand, within AO353_02075at 442.717 kb on - strand, within AO353_02075at 442.721 kb on + strand, within AO353_02075at 442.721 kb on + strand, within AO353_02075at 442.721 kb on + strand, within AO353_02075at 442.722 kb on - strand, within AO353_02075at 442.722 kb on - strand, within AO353_02075at 442.722 kb on - strand, within AO353_02075at 442.848 kb on + strand, within AO353_02075at 442.857 kb on + strand, within AO353_02075at 442.858 kb on - strand, within AO353_02075at 442.858 kb on - strand, within AO353_02075at 442.858 kb on - strand, within AO353_02075at 442.858 kb on - strand, within AO353_02075at 442.908 kb on + strand, within AO353_02075at 442.908 kb on + strand, within AO353_02075at 442.909 kb on - strand, within AO353_02075at 442.909 kb on - strand, within AO353_02075at 442.909 kb on - strand, within AO353_02075at 442.909 kb on - strand, within AO353_02075at 442.915 kb on - strand, within AO353_02075at 442.987 kb on + strand, within AO353_02075at 443.000 kb on - strand, within AO353_02075at 443.001 kb on + strand, within AO353_02075at 443.002 kb on - strand, within AO353_02075at 443.002 kb on - strand, within AO353_02075at 443.002 kb on - strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.086 kb on + strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.087 kb on - strand, within AO353_02075at 443.088 kb on + strand, within AO353_02075at 443.088 kb on + strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.089 kb on - strand, within AO353_02075at 443.101 kb on + strand, within AO353_02075at 443.272 kb on + strandat 443.272 kb on + strandat 443.272 kb on + strandat 443.273 kb on - strandat 443.273 kb on - strandat 443.274 kb on + strandat 443.274 kb on + strandat 443.275 kb on - strandat 443.275 kb on - strandat 443.275 kb on - strandat 443.275 kb on - strandat 443.303 kb on + strandat 443.345 kb on + strandat 443.346 kb on - strandat 443.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N1B4wt with N2E3m denitrifying replicate C
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441,235 + AO353_02070 0.11 -1.0
441,235 + AO353_02070 0.11 -0.6
441,235 + AO353_02070 0.11 -1.0
441,236 - AO353_02070 0.11 +1.0
441,236 - AO353_02070 0.11 -2.8
441,236 - AO353_02070 0.11 -2.3
441,236 - AO353_02070 0.11 -2.6
441,236 - AO353_02070 0.11 -2.0
441,236 - AO353_02070 0.11 -1.3
441,236 - AO353_02070 0.11 -1.3
441,466 + AO353_02070 0.32 -0.4
441,466 + AO353_02070 0.32 -0.0
441,466 + AO353_02070 0.32 -2.8
441,466 + AO353_02070 0.32 -1.0
441,466 + AO353_02070 0.32 -1.0
441,625 + AO353_02070 0.47 +1.0
441,625 + AO353_02070 0.47 -1.0
441,625 + AO353_02070 0.47 +1.0
441,626 - AO353_02070 0.47 -0.6
441,626 - AO353_02070 0.47 -0.0
441,626 - AO353_02070 0.47 -2.0
441,626 - AO353_02070 0.47 +1.0
441,626 - AO353_02070 0.47 +0.2
441,707 + AO353_02070 0.54 +0.4
441,707 + AO353_02070 0.54 -2.0
441,707 + AO353_02070 0.54 -0.6
441,708 - AO353_02070 0.55 -0.6
441,913 + AO353_02070 0.73 -0.0
442,055 - AO353_02070 0.86 -3.2
442,055 - AO353_02070 0.86 -2.3
442,085 + AO353_02070 0.89 -0.6
442,095 + AO353_02070 0.90 -1.0
442,095 + AO353_02070 0.90 -0.6
442,236 + -0.6
442,236 + -1.3
442,236 + +1.4
442,236 + +1.0
442,237 - -0.0
442,237 - -0.4
442,237 - +0.7
442,237 - -2.8
442,237 - -3.0
442,237 - -2.3
442,237 - -1.6
442,237 - -1.5
442,278 + -2.8
442,278 + +1.0
442,278 + -0.0
442,278 + -2.5
442,278 + +2.0
442,279 - -1.3
442,279 - -2.3
442,283 - -1.2
442,283 - -1.6
442,283 - -0.6
442,437 + AO353_02075 0.21 -0.6
442,438 - AO353_02075 0.21 -2.6
442,438 - AO353_02075 0.21 -1.8
442,438 - AO353_02075 0.21 -0.8
442,438 - AO353_02075 0.21 -2.3
442,438 - AO353_02075 0.21 -0.6
442,438 - AO353_02075 0.21 -2.0
442,438 - AO353_02075 0.21 -0.6
442,464 + AO353_02075 0.24 +1.0
442,464 + AO353_02075 0.24 -1.3
442,465 - AO353_02075 0.24 -1.4
442,554 + AO353_02075 0.32 -0.7
442,554 + AO353_02075 0.32 -1.6
442,555 - AO353_02075 0.32 -1.0
442,555 - AO353_02075 0.32 -0.9
442,555 - AO353_02075 0.32 -1.7
442,555 - AO353_02075 0.32 -2.6
442,555 - AO353_02075 0.32 -1.3
442,581 + AO353_02075 0.35 -1.3
442,581 + AO353_02075 0.35 -0.6
442,582 - AO353_02075 0.35 -2.0
442,582 - AO353_02075 0.35 -2.3
442,582 - AO353_02075 0.35 -0.2
442,582 - AO353_02075 0.35 -3.5
442,582 - AO353_02075 0.35 -1.0
442,611 + AO353_02075 0.37 -0.0
442,611 + AO353_02075 0.37 -1.0
442,612 - AO353_02075 0.37 -3.2
442,612 - AO353_02075 0.37 -2.3
442,612 - AO353_02075 0.37 -2.3
442,716 + AO353_02075 0.47 -0.0
442,717 - AO353_02075 0.47 -1.8
442,717 - AO353_02075 0.47 +1.0
442,721 + AO353_02075 0.48 -1.0
442,721 + AO353_02075 0.48 -1.0
442,721 + AO353_02075 0.48 +1.6
442,722 - AO353_02075 0.48 -2.3
442,722 - AO353_02075 0.48 -2.2
442,722 - AO353_02075 0.48 -1.0
442,848 + AO353_02075 0.59 +1.0
442,857 + AO353_02075 0.60 -0.2
442,858 - AO353_02075 0.60 -0.8
442,858 - AO353_02075 0.60 -0.9
442,858 - AO353_02075 0.60 +0.2
442,858 - AO353_02075 0.60 -4.3
442,908 + AO353_02075 0.65 -2.0
442,908 + AO353_02075 0.65 +3.3
442,909 - AO353_02075 0.65 -1.6
442,909 - AO353_02075 0.65 -1.2
442,909 - AO353_02075 0.65 -2.0
442,909 - AO353_02075 0.65 -0.6
442,915 - AO353_02075 0.65 +0.5
442,987 + AO353_02075 0.72 -1.3
443,000 - AO353_02075 0.73 -1.6
443,001 + AO353_02075 0.73 -2.2
443,002 - AO353_02075 0.73 -0.8
443,002 - AO353_02075 0.73 -1.6
443,002 - AO353_02075 0.73 -1.3
443,086 + AO353_02075 0.81 -0.3
443,086 + AO353_02075 0.81 -1.3
443,086 + AO353_02075 0.81 -1.3
443,086 + AO353_02075 0.81 -1.0
443,086 + AO353_02075 0.81 +1.0
443,087 - AO353_02075 0.81 -0.6
443,087 - AO353_02075 0.81 -1.0
443,087 - AO353_02075 0.81 -1.9
443,087 - AO353_02075 0.81 -0.0
443,087 - AO353_02075 0.81 -2.2
443,087 - AO353_02075 0.81 -0.0
443,088 + AO353_02075 0.81 -0.6
443,088 + AO353_02075 0.81 -1.0
443,089 - AO353_02075 0.81 -1.0
443,089 - AO353_02075 0.81 -1.8
443,089 - AO353_02075 0.81 -1.3
443,089 - AO353_02075 0.81 -0.4
443,089 - AO353_02075 0.81 -1.0
443,101 + AO353_02075 0.83 -1.3
443,272 + -1.3
443,272 + -0.4
443,272 + -0.6
443,273 - +0.4
443,273 - -1.6
443,274 + -1.3
443,274 + -2.9
443,275 - -0.0
443,275 - +0.7
443,275 - -0.2
443,275 - -2.5
443,303 + -0.0
443,345 + -2.5
443,346 - +1.0
443,409 - -2.0

Or see this region's nucleotide sequence