Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01995

Experiment: N1B4wt with N2E3m denitrifying replicate C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01990 and AO353_01995 are separated by 115 nucleotidesAO353_01995 and AO353_02000 are separated by 16 nucleotides AO353_01990: AO353_01990 - UDP-N-acetylglucosamine 2-epimerase, at 421,400 to 422,512 _01990 AO353_01995: AO353_01995 - hypothetical protein, at 422,628 to 426,335 _01995 AO353_02000: AO353_02000 - polysaccharide/polyol phosphate ABC transporter ATP-binding protein, at 426,352 to 427,641 _02000 Position (kb) 422 423 424 425 426 427Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 421.664 kb on - strand, within AO353_01990at 421.664 kb on - strand, within AO353_01990at 421.674 kb on + strand, within AO353_01990at 421.674 kb on + strand, within AO353_01990at 421.708 kb on - strand, within AO353_01990at 421.713 kb on - strand, within AO353_01990at 421.756 kb on + strand, within AO353_01990at 421.757 kb on - strand, within AO353_01990at 421.758 kb on + strand, within AO353_01990at 421.820 kb on - strand, within AO353_01990at 421.895 kb on + strand, within AO353_01990at 421.941 kb on - strand, within AO353_01990at 421.982 kb on - strand, within AO353_01990at 422.002 kb on + strand, within AO353_01990at 422.002 kb on + strand, within AO353_01990at 422.002 kb on + strand, within AO353_01990at 422.003 kb on - strand, within AO353_01990at 422.003 kb on - strand, within AO353_01990at 422.027 kb on + strand, within AO353_01990at 422.134 kb on + strand, within AO353_01990at 422.258 kb on - strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.372 kb on - strand, within AO353_01990at 422.372 kb on - strand, within AO353_01990at 422.372 kb on - strand, within AO353_01990at 422.470 kb on + strandat 422.471 kb on - strandat 422.471 kb on - strandat 422.512 kb on + strandat 422.513 kb on - strandat 422.594 kb on + strandat 422.631 kb on + strandat 422.683 kb on + strandat 422.713 kb on + strandat 422.713 kb on + strandat 422.713 kb on + strandat 422.717 kb on + strandat 422.717 kb on + strandat 422.718 kb on - strandat 422.829 kb on - strandat 422.854 kb on + strandat 422.854 kb on + strandat 422.854 kb on + strandat 422.855 kb on - strandat 422.884 kb on - strandat 422.910 kb on - strandat 422.910 kb on - strandat 423.081 kb on + strand, within AO353_01995at 423.081 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.281 kb on + strand, within AO353_01995at 423.282 kb on - strand, within AO353_01995at 423.282 kb on - strand, within AO353_01995at 423.282 kb on - strand, within AO353_01995at 423.295 kb on + strand, within AO353_01995at 423.295 kb on + strand, within AO353_01995at 423.295 kb on + strand, within AO353_01995at 423.309 kb on + strand, within AO353_01995at 423.309 kb on + strand, within AO353_01995at 423.310 kb on - strand, within AO353_01995at 423.359 kb on + strand, within AO353_01995at 423.525 kb on + strand, within AO353_01995at 423.586 kb on + strand, within AO353_01995at 423.586 kb on + strand, within AO353_01995at 423.587 kb on - strand, within AO353_01995at 423.587 kb on - strand, within AO353_01995at 423.588 kb on + strand, within AO353_01995at 423.589 kb on - strand, within AO353_01995at 423.589 kb on - strand, within AO353_01995at 423.589 kb on - strand, within AO353_01995at 423.600 kb on + strand, within AO353_01995at 423.601 kb on - strand, within AO353_01995at 423.601 kb on - strand, within AO353_01995at 423.602 kb on + strand, within AO353_01995at 423.677 kb on + strand, within AO353_01995at 423.682 kb on - strand, within AO353_01995at 423.682 kb on - strand, within AO353_01995at 423.682 kb on - strand, within AO353_01995at 423.682 kb on - strand, within AO353_01995at 423.705 kb on + strand, within AO353_01995at 423.705 kb on + strand, within AO353_01995at 423.706 kb on - strand, within AO353_01995at 423.748 kb on - strand, within AO353_01995at 423.748 kb on - strand, within AO353_01995at 423.748 kb on - strand, within AO353_01995at 423.751 kb on + strand, within AO353_01995at 423.751 kb on + strand, within AO353_01995at 423.752 kb on - strand, within AO353_01995at 423.752 kb on - strand, within AO353_01995at 423.793 kb on + strand, within AO353_01995at 423.794 kb on - strand, within AO353_01995at 423.794 kb on - strand, within AO353_01995at 423.862 kb on + strand, within AO353_01995at 423.862 kb on + strand, within AO353_01995at 423.863 kb on - strand, within AO353_01995at 423.881 kb on - strand, within AO353_01995at 423.889 kb on + strand, within AO353_01995at 423.893 kb on + strand, within AO353_01995at 423.894 kb on - strand, within AO353_01995at 423.901 kb on + strand, within AO353_01995at 423.902 kb on - strand, within AO353_01995at 423.906 kb on - strand, within AO353_01995at 423.906 kb on - strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 424.068 kb on - strand, within AO353_01995at 424.075 kb on + strand, within AO353_01995at 424.075 kb on + strand, within AO353_01995at 424.076 kb on - strand, within AO353_01995at 424.076 kb on - strand, within AO353_01995at 424.102 kb on + strand, within AO353_01995at 424.102 kb on + strand, within AO353_01995at 424.103 kb on - strand, within AO353_01995at 424.112 kb on - strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.182 kb on - strand, within AO353_01995at 424.182 kb on - strand, within AO353_01995at 424.182 kb on - strand, within AO353_01995at 424.184 kb on + strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.299 kb on + strandat 424.299 kb on + strand, within AO353_01995at 424.638 kb on + strand, within AO353_01995at 424.741 kb on + strand, within AO353_01995at 424.741 kb on + strand, within AO353_01995at 424.741 kb on + strand, within AO353_01995at 424.791 kb on + strand, within AO353_01995at 424.971 kb on + strand, within AO353_01995at 424.971 kb on + strand, within AO353_01995at 424.977 kb on + strand, within AO353_01995at 424.977 kb on + strand, within AO353_01995at 424.977 kb on + strand, within AO353_01995at 424.992 kb on + strand, within AO353_01995at 424.992 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.214 kb on + strand, within AO353_01995at 425.219 kb on + strand, within AO353_01995at 425.219 kb on + strand, within AO353_01995at 425.219 kb on + strand, within AO353_01995at 425.259 kb on + strand, within AO353_01995at 425.259 kb on + strand, within AO353_01995at 425.259 kb on + strand, within AO353_01995at 425.273 kb on + strand, within AO353_01995at 425.273 kb on + strand, within AO353_01995at 425.310 kb on + strand, within AO353_01995at 425.320 kb on + strand, within AO353_01995at 425.404 kb on + strand, within AO353_01995at 425.404 kb on + strand, within AO353_01995at 425.426 kb on + strand, within AO353_01995at 425.521 kb on + strand, within AO353_01995at 425.789 kb on + strandat 426.354 kb on - strandat 426.354 kb on - strandat 426.598 kb on - strand, within AO353_02000at 426.749 kb on - strand, within AO353_02000at 426.749 kb on - strand, within AO353_02000at 426.751 kb on - strand, within AO353_02000at 426.868 kb on - strand, within AO353_02000at 426.911 kb on - strand, within AO353_02000at 426.957 kb on - strand, within AO353_02000at 426.961 kb on - strand, within AO353_02000at 426.988 kb on - strand, within AO353_02000at 427.159 kb on - strand, within AO353_02000

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Per-strain Table

Position Strand Gene LocusTag Fraction N1B4wt with N2E3m denitrifying replicate C
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421,664 - AO353_01990 0.24 -0.0
421,664 - AO353_01990 0.24 +1.0
421,674 + AO353_01990 0.25 -0.3
421,674 + AO353_01990 0.25 -0.0
421,708 - AO353_01990 0.28 -0.6
421,713 - AO353_01990 0.28 -0.3
421,756 + AO353_01990 0.32 -0.6
421,757 - AO353_01990 0.32 +0.8
421,758 + AO353_01990 0.32 -1.0
421,820 - AO353_01990 0.38 -0.0
421,895 + AO353_01990 0.44 -1.0
421,941 - AO353_01990 0.49 -1.6
421,982 - AO353_01990 0.52 -2.2
422,002 + AO353_01990 0.54 -1.0
422,002 + AO353_01990 0.54 -0.6
422,002 + AO353_01990 0.54 +1.0
422,003 - AO353_01990 0.54 +1.4
422,003 - AO353_01990 0.54 -1.3
422,027 + AO353_01990 0.56 -0.6
422,134 + AO353_01990 0.66 -2.2
422,258 - AO353_01990 0.77 -2.9
422,315 + AO353_01990 0.82 +1.0
422,315 + AO353_01990 0.82 -1.0
422,315 + AO353_01990 0.82 -2.6
422,315 + AO353_01990 0.82 -0.3
422,316 - AO353_01990 0.82 -0.6
422,316 - AO353_01990 0.82 -0.6
422,316 - AO353_01990 0.82 +1.2
422,316 - AO353_01990 0.82 -0.0
422,316 - AO353_01990 0.82 -1.6
422,372 - AO353_01990 0.87 -1.0
422,372 - AO353_01990 0.87 -0.0
422,372 - AO353_01990 0.87 -0.6
422,470 + -0.0
422,471 - -1.6
422,471 - +0.3
422,512 + +0.6
422,513 - -1.0
422,594 + +1.7
422,631 + +1.0
422,683 + -1.6
422,713 + -1.0
422,713 + -1.0
422,713 + -0.6
422,717 + +1.3
422,717 + -1.0
422,718 - -1.0
422,829 - +1.0
422,854 + +1.0
422,854 + -1.3
422,854 + -0.6
422,855 - -0.0
422,884 - +0.2
422,910 - +1.0
422,910 - -0.0
423,081 + AO353_01995 0.12 +1.0
423,081 + AO353_01995 0.12 +0.5
423,142 + AO353_01995 0.14 -1.0
423,142 + AO353_01995 0.14 +1.0
423,142 + AO353_01995 0.14 -2.0
423,142 + AO353_01995 0.14 -1.0
423,142 + AO353_01995 0.14 -0.2
423,142 + AO353_01995 0.14 -1.3
423,143 - AO353_01995 0.14 -2.2
423,143 - AO353_01995 0.14 +1.0
423,143 - AO353_01995 0.14 +0.8
423,143 - AO353_01995 0.14 -2.5
423,143 - AO353_01995 0.14 -0.6
423,143 - AO353_01995 0.14 -0.2
423,143 - AO353_01995 0.14 -0.6
423,143 - AO353_01995 0.14 -2.0
423,281 + AO353_01995 0.18 -2.5
423,282 - AO353_01995 0.18 -0.0
423,282 - AO353_01995 0.18 -1.0
423,282 - AO353_01995 0.18 -1.0
423,295 + AO353_01995 0.18 -1.3
423,295 + AO353_01995 0.18 -0.6
423,295 + AO353_01995 0.18 -0.8
423,309 + AO353_01995 0.18 -1.6
423,309 + AO353_01995 0.18 -2.5
423,310 - AO353_01995 0.18 -0.0
423,359 + AO353_01995 0.20 +2.2
423,525 + AO353_01995 0.24 -1.6
423,586 + AO353_01995 0.26 -1.1
423,586 + AO353_01995 0.26 -2.0
423,587 - AO353_01995 0.26 -0.0
423,587 - AO353_01995 0.26 -0.0
423,588 + AO353_01995 0.26 +2.0
423,589 - AO353_01995 0.26 -1.0
423,589 - AO353_01995 0.26 -1.0
423,589 - AO353_01995 0.26 -2.0
423,600 + AO353_01995 0.26 -0.0
423,601 - AO353_01995 0.26 +1.0
423,601 - AO353_01995 0.26 -2.2
423,602 + AO353_01995 0.26 -1.3
423,677 + AO353_01995 0.28 -0.2
423,682 - AO353_01995 0.28 -0.0
423,682 - AO353_01995 0.28 -0.0
423,682 - AO353_01995 0.28 -0.6
423,682 - AO353_01995 0.28 +1.0
423,705 + AO353_01995 0.29 -0.6
423,705 + AO353_01995 0.29 -0.0
423,706 - AO353_01995 0.29 -2.2
423,748 - AO353_01995 0.30 -0.6
423,748 - AO353_01995 0.30 -1.3
423,748 - AO353_01995 0.30 +1.0
423,751 + AO353_01995 0.30 -1.3
423,751 + AO353_01995 0.30 -2.0
423,752 - AO353_01995 0.30 +1.0
423,752 - AO353_01995 0.30 -1.8
423,793 + AO353_01995 0.31 -1.8
423,794 - AO353_01995 0.31 +1.0
423,794 - AO353_01995 0.31 +1.3
423,862 + AO353_01995 0.33 -1.0
423,862 + AO353_01995 0.33 -1.0
423,863 - AO353_01995 0.33 -1.6
423,881 - AO353_01995 0.34 +1.0
423,889 + AO353_01995 0.34 -2.2
423,893 + AO353_01995 0.34 +1.8
423,894 - AO353_01995 0.34 +0.2
423,901 + AO353_01995 0.34 -0.0
423,902 - AO353_01995 0.34 +0.4
423,906 - AO353_01995 0.34 -0.0
423,906 - AO353_01995 0.34 +1.6
423,939 + AO353_01995 0.35 -1.0
423,939 + AO353_01995 0.35 +1.0
423,939 + AO353_01995 0.35 -1.8
423,939 + AO353_01995 0.35 -1.6
423,939 + AO353_01995 0.35 -1.6
423,939 + AO353_01995 0.35 +1.0
423,939 + AO353_01995 0.35 -0.6
423,940 - AO353_01995 0.35 -1.8
423,940 - AO353_01995 0.35 -1.0
423,940 - AO353_01995 0.35 -1.0
423,940 - AO353_01995 0.35 -2.6
423,940 - AO353_01995 0.35 -1.3
423,940 - AO353_01995 0.35 -1.3
423,940 - AO353_01995 0.35 -1.3
424,068 - AO353_01995 0.39 -0.0
424,075 + AO353_01995 0.39 +0.5
424,075 + AO353_01995 0.39 -2.3
424,076 - AO353_01995 0.39 -1.7
424,076 - AO353_01995 0.39 +1.0
424,102 + AO353_01995 0.40 +1.0
424,102 + AO353_01995 0.40 -2.2
424,103 - AO353_01995 0.40 +1.4
424,112 - AO353_01995 0.40 -0.0
424,181 + AO353_01995 0.42 -2.0
424,181 + AO353_01995 0.42 -1.0
424,181 + AO353_01995 0.42 -0.6
424,181 + AO353_01995 0.42 -0.0
424,181 + AO353_01995 0.42 -1.0
424,181 + AO353_01995 0.42 +2.0
424,182 - AO353_01995 0.42 -0.6
424,182 - AO353_01995 0.42 -0.0
424,182 - AO353_01995 0.42 -0.6
424,184 + AO353_01995 0.42 +1.3
424,185 - AO353_01995 0.42 -1.0
424,185 - AO353_01995 0.42 -1.3
424,185 - AO353_01995 0.42 +3.8
424,185 - AO353_01995 0.42 -1.3
424,185 - AO353_01995 0.42 -0.0
424,185 - AO353_01995 0.42 -0.6
424,276 + AO353_01995 0.44 -2.0
424,276 + AO353_01995 0.44 -2.3
424,276 + AO353_01995 0.44 +1.0
424,276 + AO353_01995 0.44 -0.6
424,276 + AO353_01995 0.44 -1.8
424,276 + AO353_01995 0.44 -0.0
424,276 + AO353_01995 0.44 +1.0
424,277 - AO353_01995 0.44 -2.7
424,277 - AO353_01995 0.44 -1.3
424,277 - AO353_01995 0.44 +1.0
424,277 - AO353_01995 0.44 -1.3
424,277 - AO353_01995 0.44 -0.2
424,299 + -1.0
424,299 + AO353_01995 0.45 -1.0
424,638 + AO353_01995 0.54 -0.0
424,741 + AO353_01995 0.57 -0.0
424,741 + AO353_01995 0.57 -1.3
424,741 + AO353_01995 0.57 -1.5
424,791 + AO353_01995 0.58 -2.0
424,971 + AO353_01995 0.63 +0.3
424,971 + AO353_01995 0.63 -0.0
424,977 + AO353_01995 0.63 -1.0
424,977 + AO353_01995 0.63 -0.0
424,977 + AO353_01995 0.63 -2.0
424,992 + AO353_01995 0.64 -1.0
424,992 + AO353_01995 0.64 -1.8
425,117 + AO353_01995 0.67 -0.6
425,117 + AO353_01995 0.67 -2.5
425,117 + AO353_01995 0.67 -1.0
425,117 + AO353_01995 0.67 -2.2
425,117 + AO353_01995 0.67 +1.2
425,117 + AO353_01995 0.67 -1.2
425,214 + AO353_01995 0.70 -1.8
425,219 + AO353_01995 0.70 +1.6
425,219 + AO353_01995 0.70 -1.0
425,219 + AO353_01995 0.70 -1.6
425,259 + AO353_01995 0.71 -1.8
425,259 + AO353_01995 0.71 -0.2
425,259 + AO353_01995 0.71 -0.6
425,273 + AO353_01995 0.71 -1.6
425,273 + AO353_01995 0.71 -1.3
425,310 + AO353_01995 0.72 -1.0
425,320 + AO353_01995 0.73 -0.0
425,404 + AO353_01995 0.75 -2.7
425,404 + AO353_01995 0.75 -0.6
425,426 + AO353_01995 0.75 -2.0
425,521 + AO353_01995 0.78 -0.6
425,789 + -0.0
426,354 - -0.5
426,354 - -0.3
426,598 - AO353_02000 0.19 -1.0
426,749 - AO353_02000 0.31 -1.0
426,749 - AO353_02000 0.31 -1.2
426,751 - AO353_02000 0.31 -1.0
426,868 - AO353_02000 0.40 +1.3
426,911 - AO353_02000 0.43 -1.6
426,957 - AO353_02000 0.47 +0.6
426,961 - AO353_02000 0.47 +1.0
426,988 - AO353_02000 0.49 +0.2
427,159 - AO353_02000 0.63 -1.0

Or see this region's nucleotide sequence