Experiment: N1B4wt with N2E3m denitrifying replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00720 and AO353_00725 are separated by 2 nucleotides AO353_00725 and AO353_00730 are separated by 265 nucleotides
AO353_00720: AO353_00720 - chromosome segregation protein SMC, at 154,443 to 157,931
_00720
AO353_00725: AO353_00725 - GntR family transcriptional regulator, at 157,934 to 158,593
_00725
AO353_00730: AO353_00730 - FAD-binding molybdopterin dehydrogenase, at 158,859 to 160,313
_00730
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 157.051 kb on + strand, within AO353_00720 at 157.051 kb on + strand, within AO353_00720 at 157.052 kb on - strand, within AO353_00720 at 157.052 kb on - strand, within AO353_00720 at 157.270 kb on + strand, within AO353_00720 at 157.270 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.279 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.414 kb on + strand, within AO353_00720 at 157.415 kb on - strand, within AO353_00720 at 157.415 kb on - strand, within AO353_00720 at 157.415 kb on - strand, within AO353_00720 at 157.510 kb on + strand, within AO353_00720 at 157.510 kb on + strand, within AO353_00720 at 157.585 kb on + strand at 157.585 kb on + strand at 157.585 kb on + strand at 157.586 kb on - strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.588 kb on + strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.589 kb on - strand at 157.649 kb on - strand at 157.649 kb on - strand at 157.724 kb on + strand at 157.725 kb on - strand at 157.859 kb on + strand at 157.859 kb on + strand at 157.983 kb on + strand at 157.983 kb on + strand at 157.984 kb on - strand at 157.984 kb on - strand at 158.103 kb on + strand, within AO353_00725 at 158.151 kb on + strand, within AO353_00725 at 158.151 kb on + strand, within AO353_00725 at 158.151 kb on + strand, within AO353_00725 at 158.152 kb on - strand, within AO353_00725 at 158.152 kb on - strand, within AO353_00725 at 158.152 kb on - strand, within AO353_00725 at 158.158 kb on + strand, within AO353_00725 at 158.232 kb on + strand, within AO353_00725 at 158.232 kb on + strand, within AO353_00725 at 158.232 kb on + strand, within AO353_00725 at 158.233 kb on - strand, within AO353_00725 at 158.325 kb on + strand at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.325 kb on + strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.326 kb on - strand, within AO353_00725 at 158.621 kb on - strand at 158.637 kb on - strand at 158.707 kb on + strand at 158.707 kb on + strand at 158.708 kb on - strand at 158.708 kb on - strand at 158.708 kb on - strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.732 kb on + strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.733 kb on - strand at 158.758 kb on + strand at 158.758 kb on + strand at 158.772 kb on + strand at 158.772 kb on + strand at 158.772 kb on + strand at 158.773 kb on - strand at 158.773 kb on - strand at 158.810 kb on - strand at 158.837 kb on + strand at 158.838 kb on - strand at 158.872 kb on + strand at 158.872 kb on + strand at 158.876 kb on + strand at 158.877 kb on - strand at 158.877 kb on - strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.931 kb on + strand at 158.932 kb on - strand at 158.932 kb on - strand at 158.932 kb on - strand at 158.932 kb on - strand at 158.999 kb on + strand at 159.000 kb on - strand at 159.000 kb on - strand at 159.492 kb on + strand, within AO353_00730 at 159.492 kb on + strand, within AO353_00730 at 159.492 kb on + strand, within AO353_00730 at 159.492 kb on + strand, within AO353_00730 at 159.492 kb on + strand, within AO353_00730 at 159.493 kb on - strand, within AO353_00730 at 159.493 kb on - strand, within AO353_00730 at 159.493 kb on - strand, within AO353_00730 at 159.493 kb on - strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.585 kb on + strand, within AO353_00730 at 159.586 kb on - strand, within AO353_00730 at 159.586 kb on - strand, within AO353_00730 at 159.586 kb on - strand, within AO353_00730
Per-strain Table
Position Strand Gene LocusTag Fraction N1B4wt with N2E3m denitrifying replicate C remove 157,051 + AO353_00720 0.75 -2.0 157,051 + AO353_00720 0.75 -0.3 157,052 - AO353_00720 0.75 -2.8 157,052 - AO353_00720 0.75 -0.5 157,270 + AO353_00720 0.81 -1.4 157,270 + AO353_00720 0.81 -1.1 157,279 + AO353_00720 0.81 -1.9 157,279 + AO353_00720 0.81 -1.3 157,279 + AO353_00720 0.81 +0.3 157,279 + AO353_00720 0.81 +0.5 157,414 + AO353_00720 0.85 -0.4 157,414 + AO353_00720 0.85 -0.1 157,414 + AO353_00720 0.85 -2.6 157,414 + AO353_00720 0.85 -0.1 157,415 - AO353_00720 0.85 +0.5 157,415 - AO353_00720 0.85 +0.9 157,415 - AO353_00720 0.85 -0.7 157,510 + AO353_00720 0.88 -0.1 157,510 + AO353_00720 0.88 +2.1 157,585 + -1.0 157,585 + -2.3 157,585 + -1.6 157,586 - -2.0 157,588 + -0.1 157,588 + -1.7 157,588 + +1.0 157,588 + -1.4 157,588 + -3.1 157,588 + +1.0 157,588 + -0.4 157,588 + +1.5 157,589 - -0.7 157,589 - +0.9 157,589 - +0.9 157,589 - -0.7 157,589 - -0.7 157,589 - -1.7 157,589 - +1.2 157,589 - -1.4 157,589 - -1.4 157,589 - -0.6 157,589 - +0.4 157,589 - -2.1 157,589 - -0.3 157,589 - -0.3 157,649 - -0.1 157,649 - -0.1 157,724 + -1.4 157,725 - -1.3 157,859 + -0.8 157,859 + +0.9 157,983 + -3.1 157,983 + -3.6 157,984 - +1.5 157,984 - +0.0 158,103 + AO353_00725 0.26 -0.1 158,151 + AO353_00725 0.33 -0.7 158,151 + AO353_00725 0.33 -0.4 158,151 + AO353_00725 0.33 +0.0 158,152 - AO353_00725 0.33 +0.6 158,152 - AO353_00725 0.33 -1.3 158,152 - AO353_00725 0.33 -0.1 158,158 + AO353_00725 0.34 -0.7 158,232 + AO353_00725 0.45 -0.7 158,232 + AO353_00725 0.45 -1.1 158,232 + AO353_00725 0.45 -1.5 158,233 - AO353_00725 0.45 +0.9 158,325 + -1.4 158,325 + AO353_00725 0.59 +0.9 158,325 + AO353_00725 0.59 -1.4 158,325 + +0.9 158,325 + AO353_00725 0.59 +0.1 158,325 + AO353_00725 0.59 -0.3 158,325 + AO353_00725 0.59 -2.1 158,325 + AO353_00725 0.59 +0.2 158,325 + AO353_00725 0.59 -0.1 158,325 + AO353_00725 0.59 -0.7 158,325 + AO353_00725 0.59 -0.1 158,325 + AO353_00725 0.59 -0.7 158,325 + AO353_00725 0.59 -1.9 158,326 - AO353_00725 0.59 -2.3 158,326 - AO353_00725 0.59 -0.1 158,326 - AO353_00725 0.59 +0.2 158,326 - AO353_00725 0.59 -0.6 158,326 - AO353_00725 0.59 +0.0 158,621 - -1.4 158,637 - -1.4 158,707 + -0.7 158,707 + +2.9 158,708 - -1.7 158,708 - +0.6 158,708 - -2.4 158,732 + -0.7 158,732 + -0.1 158,732 + +4.7 158,732 + +0.5 158,732 + -0.6 158,732 + -0.7 158,732 + +0.6 158,732 + -3.4 158,732 + -0.1 158,733 - -0.0 158,733 - -0.7 158,733 - -0.8 158,733 - +0.1 158,733 - -0.1 158,733 - +1.9 158,733 - +1.5 158,758 + +0.8 158,758 + +0.6 158,772 + +0.2 158,772 + -0.7 158,772 + -0.4 158,773 - +1.5 158,773 - -0.1 158,810 - -0.6 158,837 + -0.6 158,838 - -0.6 158,872 + -2.3 158,872 + -0.5 158,876 + -2.1 158,877 - +2.5 158,877 - +1.3 158,931 + -0.9 158,931 + -0.1 158,931 + -0.1 158,931 + +0.0 158,931 + +0.6 158,931 + -2.9 158,932 - +1.0 158,932 - -0.7 158,932 - +0.7 158,932 - -1.0 158,999 + -1.4 159,000 - +0.9 159,000 - +0.2 159,492 + AO353_00730 0.44 +1.5 159,492 + AO353_00730 0.44 +0.9 159,492 + AO353_00730 0.44 -0.5 159,492 + AO353_00730 0.44 +2.5 159,492 + AO353_00730 0.44 -0.4 159,493 - AO353_00730 0.44 +0.6 159,493 - AO353_00730 0.44 -0.1 159,493 - AO353_00730 0.44 -0.1 159,493 - AO353_00730 0.44 +0.8 159,585 + AO353_00730 0.50 +0.6 159,585 + AO353_00730 0.50 +0.9 159,585 + AO353_00730 0.50 -0.7 159,585 + AO353_00730 0.50 +0.4 159,585 + AO353_00730 0.50 -1.9 159,586 - AO353_00730 0.50 +0.9 159,586 - AO353_00730 0.50 +0.4 159,586 - AO353_00730 0.50 +0.5
Or see this region's nucleotide sequence