Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00655

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
137,908	+		AO353_00650	0.22	-0.1
138,110	+		AO353_00650	0.52	-0.7
138,110	+		AO353_00650	0.52	+2.2
138,110	+		AO353_00650	0.52	+0.9
138,110	+		AO353_00650	0.52	-1.4
138,111	-		AO353_00650	0.52	-0.4
138,111	-		AO353_00650	0.52	-1.4
138,349	-		AO353_00650	0.87	-1.4
138,436	+				-0.6
138,436	+				+2.2
138,436	+				-2.1
138,436	+				-0.2
138,437	-				+0.9
138,437	-				-0.3
138,437	-				-1.4
138,437	-				+0.1
138,456	+				-1.7
138,456	+				+0.9
138,456	+				-0.4
138,457	-				-0.5
138,457	-				-1.4
138,462	+				-2.4
138,462	+				-1.1
138,462	+				-1.1
138,463	-				+0.4
138,503	-				+0.0
138,544	+				+0.0
138,545	-				-1.4
138,545	-				-0.5
138,557	+				-0.9
138,557	+				-0.4
138,557	+				-1.7
138,557	+				+0.9
138,557	+				+0.9
138,557	+				+0.7
138,558	-				-0.3
138,558	-				-0.9
138,558	-				+0.4
138,558	-				-0.4
138,558	-				+1.6
138,558	-				+1.9
138,558	-				+0.9
138,558	-				+0.0
138,558	-				-0.3
138,558	-				-0.3
138,558	-				-1.4
138,588	+				-0.4
138,588	+				-0.6
138,589	-				+0.3
138,589	-				-0.1
138,589	-				+0.2
138,759	+				-1.4
138,760	-				-1.1
138,804	-				+0.5
138,864	+		AO353_00655	0.12	-3.1
138,864	+		AO353_00655	0.12	-2.9
138,864	+		AO353_00655	0.12	-2.9
138,864	+		AO353_00655	0.12	-2.8
138,864	+		AO353_00655	0.12	+0.9
138,864	+				-0.1
138,865	-		AO353_00655	0.12	-2.3
138,865	-		AO353_00655	0.12	-0.1
138,865	-		AO353_00655	0.12	-3.0
138,897	+		AO353_00655	0.15	-1.9
138,897	+		AO353_00655	0.15	-0.8
138,898	-		AO353_00655	0.15	-3.2
138,898	-		AO353_00655	0.15	-0.1
138,900	+		AO353_00655	0.15	-0.1
138,900	+		AO353_00655	0.15	-1.9
138,900	+		AO353_00655	0.15	+1.5
138,901	-		AO353_00655	0.15	-1.7
138,901	-		AO353_00655	0.15	-2.4
138,901	-		AO353_00655	0.15	-1.1
138,952	-		AO353_00655	0.19	-2.5
139,241	-		AO353_00655	0.39	-0.9
139,341	+		AO353_00655	0.47	-3.5
139,341	+		AO353_00655	0.47	-3.2
139,342	-		AO353_00655	0.47	-0.1
139,342	-		AO353_00655	0.47	-1.1
139,342	-		AO353_00655	0.47	-0.1
139,342	-		AO353_00655	0.47	-3.6
139,431	+		AO353_00655	0.53	-2.1
139,431	+		AO353_00655	0.53	-2.3
139,431	+		AO353_00655	0.53	-1.4
139,431	+		AO353_00655	0.53	-0.3
139,431	+		AO353_00655	0.53	-1.9
139,431	+		AO353_00655	0.53	-0.7
139,431	+		AO353_00655	0.53	-2.1
139,431	+		AO353_00655	0.53	-0.4
139,431	+		AO353_00655	0.53	+0.9
139,431	+		AO353_00655	0.53	-0.1
139,431	+		AO353_00655	0.53	-0.1
139,431	+		AO353_00655	0.53	+0.4
139,432	-		AO353_00655	0.53	-2.3
139,432	-		AO353_00655	0.53	-2.6
139,432	-		AO353_00655	0.53	-0.7
139,432	-		AO353_00655	0.53	-0.1
139,432	-		AO353_00655	0.53	+0.5
139,432	-		AO353_00655	0.53	-0.1
139,432	-		AO353_00655	0.53	-1.1
139,432	-		AO353_00655	0.53	-0.7
139,432	-		AO353_00655	0.53	-1.7
139,432	-		AO353_00655	0.53	-2.3
139,432	-		AO353_00655	0.53	-2.8
139,432	-		AO353_00655	0.53	-1.7
139,432	-		AO353_00655	0.53	-3.7
139,557	+		AO353_00655	0.62	-1.4
139,557	+		AO353_00655	0.62	-0.7
139,558	-		AO353_00655	0.62	-1.1
139,624	+		AO353_00655	0.67	-3.3
139,625	-		AO353_00655	0.67	-1.2
139,714	-		AO353_00655	0.74	+0.3
139,743	+		AO353_00655	0.76	-1.4
139,743	+		AO353_00655	0.76	-0.9
139,902	+		AO353_00655	0.87	-1.3
139,902	+		AO353_00655	0.87	-1.1
139,903	-		AO353_00655	0.87	-0.7
140,034	+				-3.3
140,035	-				-1.0
140,072	-				-0.3
140,077	-				+0.5
140,121	+				+0.5
140,121	+				-0.7
140,121	+				-0.1
140,122	-				-0.1
140,128	+				+0.1
140,128	+				+0.9
140,128	+				-0.1
140,129	-				-2.4
140,129	-				-0.8
140,129	-				+1.7
140,129	-				-0.7
140,129	-				+0.1
140,129	-				-1.4
140,129	-				-0.1
140,129	-				-2.6
140,129	-				-1.4
140,129	-				-0.7
140,129	-				-2.6
140,129	-				-0.1
140,152	+				-1.1
140,153	-				-2.6
140,749	+		AO353_00660	0.80	+0.2
140,749	+				+0.9
140,749	+		AO353_00660	0.80	-1.1
140,749	+		AO353_00660	0.80	-1.4
140,749	+		AO353_00660	0.80	-1.7
140,749	+		AO353_00660	0.80	-0.7
140,749	+		AO353_00660	0.80	-1.4
140,750	-		AO353_00660	0.81	-2.1
140,750	-		AO353_00660	0.81	+0.9
140,750	-		AO353_00660	0.81	-1.9
140,750	-		AO353_00660	0.81	-0.7
140,932	+				+1.5
140,932	+				-1.4
140,933	-				+1.5
140,933	-				-1.0
140,933	-				-2.3
140,934	+				+0.2
140,934	+				-0.8
140,934	+				-1.1
140,934	+				-0.4
140,934	+				-0.7
140,935	-				-1.4
140,935	-				+0.9
140,935	-				-1.7
140,935	-				+0.4
140,935	-				+0.4
140,935	-				-0.7
140,935	-				-0.2
140,949	-				+0.9