Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00485

Experiment: N1B4wt with N2E3m denitrifying replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	N1B4wt with N2E3m denitrifying replicate C
96,326	+				+1.4
96,327	-				-1.7
96,327	-				+0.9
96,343	+				-0.3
96,343	+				-0.7
96,343	+				+0.7
96,344	-				+0.3
96,344	-				-1.1
96,374	+				+0.4
96,374	+				-0.1
96,374	+				-0.7
96,374	+				-2.3
96,374	+				+2.5
96,374	+				+0.7
96,374	+				+0.9
96,374	+				-0.1
96,374	+				+0.5
96,374	+				-0.7
96,375	-				-3.1
96,375	-				-0.9
96,375	-				-0.5
96,375	-				+1.1
96,375	-				+1.9
96,375	-				-0.3
96,375	-				-1.1
96,375	-				-2.3
96,375	-				-1.0
96,375	-				-1.1
96,375	-				+0.9
96,375	-				-2.1
96,375	-				-0.1
96,375	-				-1.4
96,375	-				-1.4
96,376	+				+1.5
96,376	+				-0.3
96,376	+				+1.3
96,376	+				-0.1
96,376	+				+1.5
96,376	+				-0.4
96,376	+				+1.7
96,376	+				-3.2
96,376	+				-0.3
96,376	+				+0.3
96,376	+				+1.5
96,377	-				-0.9
96,377	-				-0.4
96,377	-				-0.6
96,377	-				+0.4
96,377	-				+0.2
96,377	-				-2.4
96,377	-				-2.7
96,377	-				+1.3
96,377	-				+0.2
96,377	-				-2.1
96,377	-				-0.5
96,377	-				-2.9
96,377	-				+0.9
96,377	-				-0.1
96,377	-				-3.4
96,377	-				-0.8
96,377	-				+0.6
96,377	-				-1.4
96,377	-				+0.3
96,377	-				-1.9
96,377	-				+1.4
96,377	-				-0.1
96,377	-				-0.3
96,377	-				-0.6
96,377	-				+0.4
96,378	+				-2.3
96,378	+				+2.2
96,378	+				-1.1
96,378	+				-0.9
96,378	+				-1.0
96,378	+				+0.1
96,379	-				-1.7
96,379	-				-0.6
96,433	+				-1.9
96,477	+				+0.3
96,531	-				+0.5
96,531	-				-0.1
96,601	-		AO353_00480	0.16	-1.7
96,601	-		AO353_00480	0.16	+0.1
96,612	+		AO353_00480	0.18	+0.9
96,613	-		AO353_00480	0.18	+0.5
96,658	-		AO353_00480	0.26	-0.5
96,811	+		AO353_00480	0.53	+0.9
96,812	-		AO353_00480	0.53	-0.4
96,893	+		AO353_00480	0.68	-0.9
96,893	+		AO353_00480	0.68	-0.7
96,893	+		AO353_00480	0.68	+2.4
96,894	-				+0.6
96,894	-		AO353_00480	0.68	-0.7
96,894	-		AO353_00480	0.68	-0.8
96,894	-		AO353_00480	0.68	-0.7
96,957	-		AO353_00480	0.79	-2.8
96,957	-		AO353_00480	0.79	-1.1
97,005	+		AO353_00480	0.88	-0.2
97,006	-		AO353_00480	0.88	-0.7
97,016	+				+0.4
97,017	-				+0.1
97,017	-				+0.8
97,076	+				+0.7
97,079	+				+0.7
97,079	+				+1.9
97,079	+				-0.7
97,079	+				-2.8
97,079	+				+2.9
97,080	-				-1.1
97,080	-				-1.4
97,207	-		AO353_00485	0.13	-0.1
97,252	+		AO353_00485	0.17	-0.4
97,252	+		AO353_00485	0.17	+0.7
97,253	-		AO353_00485	0.17	+1.1
97,392	+		AO353_00485	0.31	-1.0
97,393	-		AO353_00485	0.31	+0.4
97,434	+		AO353_00485	0.35	+1.1
97,435	-		AO353_00485	0.35	-1.0
97,522	-		AO353_00485	0.43	-0.7
97,539	+		AO353_00485	0.45	+2.5
97,540	-		AO353_00485	0.45	+0.1
97,540	-		AO353_00485	0.45	-1.7
97,546	+				-2.7
97,547	-		AO353_00485	0.46	-0.9
97,612	+		AO353_00485	0.52	+0.4
97,612	+		AO353_00485	0.52	+0.5
97,613	-		AO353_00485	0.52	+0.4
97,613	-		AO353_00485	0.52	-0.1
97,613	-		AO353_00485	0.52	+0.6
97,613	-		AO353_00485	0.52	-0.3
97,616	+		AO353_00485	0.52	+1.4
97,617	-		AO353_00485	0.52	+0.9
97,617	-		AO353_00485	0.52	-1.4
97,632	-		AO353_00485	0.54	-2.8
97,632	-		AO353_00485	0.54	+0.2
97,744	+		AO353_00485	0.65	+1.0
97,744	+		AO353_00485	0.65	+0.5
97,745	-		AO353_00485	0.65	+0.6
97,745	-		AO353_00485	0.65	+0.9
97,784	+		AO353_00485	0.69	+0.5
97,785	-		AO353_00485	0.69	-1.7
97,785	-		AO353_00485	0.69	-1.2
97,785	-		AO353_00485	0.69	+0.8
97,894	+		AO353_00485	0.79	+0.3
97,895	-		AO353_00485	0.79	+0.9
97,903	+		AO353_00485	0.80	-2.1
97,904	-		AO353_00485	0.80	+0.0
97,968	+		AO353_00485	0.86	+0.5
97,971	+		AO353_00485	0.87	+1.2
97,971	+		AO353_00485	0.87	-0.6
97,972	-		AO353_00485	0.87	-2.6
97,978	+		AO353_00485	0.87	+0.2
97,979	-		AO353_00485	0.87	-0.1
97,979	-		AO353_00485	0.87	+0.2
98,010	+				+0.2
98,151	+				-2.3
98,151	+				+0.9
98,152	-				+0.2
98,155	+				-0.5
98,155	+				+1.2
98,155	+				-0.4
98,155	+				-1.6
98,155	+				+1.4
98,155	+				+1.3
98,155	+				-1.9
98,155	+				-1.3
98,155	+				-1.7
98,155	+				+1.2
98,155	+				-0.1
98,155	+				-0.5
98,155	+				+1.3
98,156	-				-1.1
98,156	-				-1.9
98,156	-				-1.6
98,156	-				-0.5
98,156	-				-1.7
98,156	-				-1.1
98,156	-				-2.8
98,156	-				-1.9
98,156	-				-1.7
98,156	-				+1.3
98,156	-				-0.5
98,159	+				+0.6
98,159	+				+0.2
98,159	+				-0.1
98,159	+				+0.5
98,159	+				-1.4
98,159	+				+1.7
98,160	-				-0.7
98,160	-				+0.2
98,160	-				-1.1
98,160	-				-0.9
98,271	+		AO353_00490	0.22	-0.3
98,492	+		AO353_00490	0.64	+1.5
98,534	+		AO353_00490	0.72	+1.5
98,535	-		AO353_00490	0.72	-0.1
98,535	-		AO353_00490	0.72	+0.2
98,642	+				-2.6
98,664	+				+0.2
98,664	+				-0.2
98,666	+				-0.1
98,666	+				-0.8
98,666	+				-0.1
98,666	+				-0.4
98,667	-				-1.4
98,667	-				+0.9
98,667	-				+0.2
98,667	-				-0.4
98,667	-				-0.2
98,667	-				-1.4
98,667	-				-0.5
98,705	+				+0.2
98,705	+				-1.4
98,705	+				+0.2
98,706	-				+0.6
98,706	-				+0.9
98,714	+				+0.3
98,714	+				-2.4
98,828	-				+1.5
98,828	-				-0.9
98,920	+				+0.1