Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00250

Experiment: N1B4wt with N2E3m denitrifying replicate C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_00235 and AO353_00240 are separated by 42 nucleotidesAO353_00240 and AO353_00245 are separated by 141 nucleotidesAO353_00245 and AO353_00250 are separated by 92 nucleotidesAO353_00250 and AO353_00255 are separated by 29 nucleotidesAO353_00255 and AO353_00260 overlap by 4 nucleotidesAO353_00260 and AO353_00265 are separated by 72 nucleotides AO353_00235: AO353_00235 - transcriptional regulator, at 44,569 to 44,826 _00235 AO353_00240: AO353_00240 - hypothetical protein, at 44,869 to 45,048 _00240 AO353_00245: AO353_00245 - XRE family transcriptional regulator, at 45,190 to 45,537 _00245 AO353_00250: AO353_00250 - hypothetical protein, at 45,630 to 45,830 _00250 AO353_00255: AO353_00255 - hypothetical protein, at 45,860 to 46,339 _00255 AO353_00260: AO353_00260 - hypothetical protein, at 46,336 to 46,701 _00260 AO353_00265: AO353_00265 - hypothetical protein, at 46,774 to 47,007 _00265 Position (kb) 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 44.647 kb on + strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.647 kb on + strand, within AO353_00235at 44.648 kb on - strand, within AO353_00235at 44.648 kb on - strand, within AO353_00235at 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.092 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.095 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.148 kb on - strandat 45.192 kb on - strandat 45.604 kb on - strandat 45.604 kb on - strandat 45.604 kb on - strandat 45.630 kb on - strandat 45.630 kb on - strandat 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.684 kb on - strand, within AO353_00250at 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.854 kb on + strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.855 kb on - strandat 45.876 kb on + strandat 45.876 kb on + strandat 45.987 kb on - strandat 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.071 kb on - strand, within AO353_00255at 46.075 kb on - strand, within AO353_00255at 46.075 kb on - strand, within AO353_00255at 46.086 kb on - strand, within AO353_00255at 46.086 kb on - strand, within AO353_00255at 46.102 kb on - strand, within AO353_00255at 46.355 kb on + strandat 46.363 kb on + strandat 46.364 kb on - strandat 46.364 kb on - strandat 46.439 kb on + strand, within AO353_00260at 46.439 kb on + strand, within AO353_00260at 46.440 kb on - strand, within AO353_00260at 46.477 kb on + strand, within AO353_00260at 46.603 kb on - strand, within AO353_00260at 46.603 kb on - strand, within AO353_00260at 46.646 kb on - strand, within AO353_00260at 46.646 kb on - strand, within AO353_00260at 46.700 kb on - strandat 46.714 kb on - strandat 46.714 kb on - strandat 46.714 kb on - strandat 46.714 kb on - strandat 46.714 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N1B4wt with N2E3m denitrifying replicate C
remove
44,647 + AO353_00235 0.30 -0.7
44,647 + AO353_00235 0.30 -2.6
44,647 + AO353_00235 0.30 -3.8
44,647 + AO353_00235 0.30 +0.9
44,648 - AO353_00235 0.31 -2.1
44,648 - AO353_00235 0.31 +0.4
45,092 - +0.1
45,092 - -0.9
45,092 - -0.5
45,092 - +1.3
45,092 - +0.3
45,092 - -0.7
45,092 - -0.9
45,092 - -1.4
45,092 - -1.9
45,092 - +0.9
45,092 - -0.7
45,092 - -0.6
45,095 - -2.8
45,095 - -0.5
45,095 - -1.1
45,095 - -0.1
45,095 - -0.9
45,095 - +0.6
45,095 - -1.1
45,148 - +0.2
45,148 - +0.6
45,148 - -1.4
45,148 - -1.2
45,148 - -0.7
45,148 - -0.1
45,148 - -0.6
45,192 - +1.2
45,604 - +0.0
45,604 - -0.4
45,604 - +1.6
45,630 - +1.2
45,630 - +2.0
45,684 - AO353_00250 0.27 +0.9
45,684 - AO353_00250 0.27 -2.7
45,684 - AO353_00250 0.27 -1.8
45,684 - AO353_00250 0.27 +1.0
45,684 - AO353_00250 0.27 +1.2
45,684 - AO353_00250 0.27 -1.4
45,684 - AO353_00250 0.27 +0.7
45,684 - AO353_00250 0.27 +1.3
45,684 - AO353_00250 0.27 -0.1
45,854 + +0.9
45,854 + +2.7
45,854 + +0.0
45,854 + -0.7
45,854 + -1.4
45,854 + -0.8
45,854 + -1.4
45,855 - -1.7
45,855 - +1.9
45,855 - -0.7
45,855 - +0.5
45,855 - -0.3
45,855 - -1.9
45,855 - -0.1
45,855 - -2.9
45,855 - +0.5
45,855 - -2.8
45,876 + +0.1
45,876 + +0.3
45,987 - -1.1
46,071 - AO353_00255 0.44 -1.3
46,071 - AO353_00255 0.44 +1.4
46,071 - AO353_00255 0.44 -0.2
46,071 - AO353_00255 0.44 -1.7
46,071 - AO353_00255 0.44 -0.5
46,071 - AO353_00255 0.44 +0.1
46,071 - AO353_00255 0.44 -1.9
46,075 - AO353_00255 0.45 -2.4
46,075 - AO353_00255 0.45 +0.2
46,086 - AO353_00255 0.47 -1.1
46,086 - AO353_00255 0.47 +1.6
46,102 - AO353_00255 0.50 +1.2
46,355 + +1.2
46,363 + +0.3
46,364 - +2.2
46,364 - -2.3
46,439 + AO353_00260 0.28 -0.1
46,439 + AO353_00260 0.28 +0.9
46,440 - AO353_00260 0.28 +2.4
46,477 + AO353_00260 0.39 -3.4
46,603 - AO353_00260 0.73 +2.2
46,603 - AO353_00260 0.73 +1.6
46,646 - AO353_00260 0.85 -0.3
46,646 - AO353_00260 0.85 -2.8
46,700 - +0.0
46,714 - +1.0
46,714 - +0.7
46,714 - +1.9
46,714 - -1.7
46,714 - -1.0

Or see this region's nucleotide sequence