Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2874

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2873 and DvMF_2874 are separated by 528 nucleotidesDvMF_2874 and DvMF_2875 are separated by 335 nucleotides DvMF_2873: DvMF_2873 - preprotein translocase subunit SecA (RefSeq), at 3,626,815 to 3,629,349 _2873 DvMF_2874: DvMF_2874 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,629,878 to 3,631,284 _2874 DvMF_2875: DvMF_2875 - FAD linked oxidase domain protein (RefSeq), at 3,631,620 to 3,633,044 _2875 Position (kb) 3629 3630 3631 3632Strain fitness (log2 ratio) -1 0 1at 3629.613 kb on - strandat 3629.750 kb on - strandat 3629.909 kb on - strandat 3630.101 kb on - strand, within DvMF_2874at 3630.288 kb on + strand, within DvMF_2874at 3630.294 kb on - strand, within DvMF_2874at 3630.367 kb on + strand, within DvMF_2874at 3630.476 kb on - strand, within DvMF_2874at 3630.582 kb on - strand, within DvMF_2874at 3630.926 kb on - strand, within DvMF_2874at 3631.110 kb on + strand, within DvMF_2874at 3631.192 kb on - strandat 3631.463 kb on + strandat 3631.832 kb on + strand, within DvMF_2875at 3631.962 kb on - strand, within DvMF_2875at 3631.977 kb on - strand, within DvMF_2875at 3632.023 kb on - strand, within DvMF_2875at 3632.253 kb on + strand, within DvMF_2875at 3632.261 kb on - strand, within DvMF_2875at 3632.261 kb on - strand, within DvMF_2875

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,629,613 - -0.3
3,629,750 - +0.1
3,629,909 - -0.4
3,630,101 - DvMF_2874 0.16 +0.1
3,630,288 + DvMF_2874 0.29 -0.2
3,630,294 - DvMF_2874 0.30 -0.3
3,630,367 + DvMF_2874 0.35 -0.5
3,630,476 - DvMF_2874 0.43 -0.3
3,630,582 - DvMF_2874 0.50 -0.3
3,630,926 - DvMF_2874 0.74 -0.7
3,631,110 + DvMF_2874 0.88 +0.4
3,631,192 - +0.2
3,631,463 + +0.0
3,631,832 + DvMF_2875 0.15 -0.5
3,631,962 - DvMF_2875 0.24 -0.7
3,631,977 - DvMF_2875 0.25 -0.4
3,632,023 - DvMF_2875 0.28 -0.3
3,632,253 + DvMF_2875 0.44 -0.4
3,632,261 - DvMF_2875 0.45 -0.5
3,632,261 - DvMF_2875 0.45 -0.4

Or see this region's nucleotide sequence