Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2678

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2677 and DvMF_2678 are separated by 342 nucleotidesDvMF_2678 and DvMF_2679 are separated by 294 nucleotides DvMF_2677: DvMF_2677 - response regulator receiver sensor hybrid histidine kinase (RefSeq), at 3,380,356 to 3,382,266 _2677 DvMF_2678: DvMF_2678 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,382,609 to 3,384,705 _2678 DvMF_2679: DvMF_2679 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,385,000 to 3,386,460 _2679 Position (kb) 3382 3383 3384 3385Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3381.649 kb on - strand, within DvMF_2677at 3381.664 kb on + strand, within DvMF_2677at 3382.041 kb on + strand, within DvMF_2677at 3382.105 kb on - strandat 3382.115 kb on - strandat 3382.159 kb on - strandat 3382.263 kb on - strandat 3382.268 kb on - strandat 3382.706 kb on + strandat 3382.782 kb on - strandat 3382.943 kb on + strand, within DvMF_2678at 3382.943 kb on + strand, within DvMF_2678at 3383.029 kb on + strand, within DvMF_2678at 3383.099 kb on + strand, within DvMF_2678at 3383.156 kb on + strand, within DvMF_2678at 3383.266 kb on + strand, within DvMF_2678at 3383.274 kb on - strand, within DvMF_2678at 3383.317 kb on - strand, within DvMF_2678at 3383.317 kb on - strand, within DvMF_2678at 3383.432 kb on + strand, within DvMF_2678at 3383.516 kb on - strand, within DvMF_2678at 3383.523 kb on + strand, within DvMF_2678at 3383.535 kb on + strand, within DvMF_2678at 3383.552 kb on + strand, within DvMF_2678at 3384.463 kb on + strand, within DvMF_2678at 3384.567 kb on - strandat 3384.845 kb on + strandat 3384.876 kb on - strandat 3385.029 kb on + strandat 3385.183 kb on - strand, within DvMF_2679at 3385.194 kb on + strand, within DvMF_2679at 3385.396 kb on + strand, within DvMF_2679at 3385.542 kb on + strand, within DvMF_2679at 3385.657 kb on + strand, within DvMF_2679at 3385.670 kb on - strand, within DvMF_2679

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
3,381,649 - DvMF_2677 0.68 -0.5
3,381,664 + DvMF_2677 0.68 -0.4
3,382,041 + DvMF_2677 0.88 +0.6
3,382,105 - +0.1
3,382,115 - +0.1
3,382,159 - +0.3
3,382,263 - +0.1
3,382,268 - -0.4
3,382,706 + -1.5
3,382,782 - -1.8
3,382,943 + DvMF_2678 0.16 -1.2
3,382,943 + DvMF_2678 0.16 -1.7
3,383,029 + DvMF_2678 0.20 -1.3
3,383,099 + DvMF_2678 0.23 -1.0
3,383,156 + DvMF_2678 0.26 -2.1
3,383,266 + DvMF_2678 0.31 -1.2
3,383,274 - DvMF_2678 0.32 -1.8
3,383,317 - DvMF_2678 0.34 -1.0
3,383,317 - DvMF_2678 0.34 -3.9
3,383,432 + DvMF_2678 0.39 -2.0
3,383,516 - DvMF_2678 0.43 -1.0
3,383,523 + DvMF_2678 0.44 -1.0
3,383,535 + DvMF_2678 0.44 -1.3
3,383,552 + DvMF_2678 0.45 -0.9
3,384,463 + DvMF_2678 0.88 -0.8
3,384,567 - -0.7
3,384,845 + -0.3
3,384,876 - -0.4
3,385,029 + -1.5
3,385,183 - DvMF_2679 0.13 -1.9
3,385,194 + DvMF_2679 0.13 -2.0
3,385,396 + DvMF_2679 0.27 -1.3
3,385,542 + DvMF_2679 0.37 -0.3
3,385,657 + DvMF_2679 0.45 -2.5
3,385,670 - DvMF_2679 0.46 -0.4

Or see this region's nucleotide sequence