Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00430 and PGA1_c00440 are separated by 105 nucleotides PGA1_c00440 and PGA1_c00450 are separated by 73 nucleotides PGA1_c00450 and PGA1_c00460 are separated by 57 nucleotides
PGA1_c00430: PGA1_c00430 - fumarylacetoacetase Fah, at 47,516 to 48,772
_c00430
PGA1_c00440: PGA1_c00440 - homogentisate 1,2-dioxygenase HmgA, at 48,878 to 50,239
_c00440
PGA1_c00450: PGA1_c00450 - transcriptional regulator, marR family, at 50,313 to 50,753
_c00450
PGA1_c00460: PGA1_c00460 - adenylate cyclase domain-containing protein, at 50,811 to 52,025
_c00460
Position (kb) 48
49
50
51 Strain fitness (log2 ratio) -2
-1
0
1 at 47.887 kb on + strand, within PGA1_c00430 at 47.925 kb on - strand, within PGA1_c00430 at 48.002 kb on - strand, within PGA1_c00430 at 48.059 kb on + strand, within PGA1_c00430 at 48.067 kb on - strand, within PGA1_c00430 at 48.067 kb on - strand, within PGA1_c00430 at 48.067 kb on - strand, within PGA1_c00430 at 48.161 kb on - strand, within PGA1_c00430 at 48.249 kb on - strand, within PGA1_c00430 at 48.285 kb on - strand, within PGA1_c00430 at 48.287 kb on + strand, within PGA1_c00430 at 48.356 kb on - strand, within PGA1_c00430 at 48.367 kb on + strand, within PGA1_c00430 at 48.380 kb on + strand, within PGA1_c00430 at 48.390 kb on + strand, within PGA1_c00430 at 48.405 kb on - strand, within PGA1_c00430 at 48.523 kb on + strand, within PGA1_c00430 at 48.523 kb on + strand, within PGA1_c00430 at 48.526 kb on - strand, within PGA1_c00430 at 48.559 kb on + strand, within PGA1_c00430 at 48.591 kb on - strand, within PGA1_c00430 at 48.660 kb on + strand at 48.704 kb on - strand at 48.717 kb on + strand at 48.730 kb on - strand at 48.751 kb on + strand at 48.851 kb on - strand at 48.856 kb on - strand at 48.982 kb on - strand at 49.017 kb on + strand, within PGA1_c00440 at 49.093 kb on + strand, within PGA1_c00440 at 49.093 kb on + strand, within PGA1_c00440 at 49.101 kb on - strand, within PGA1_c00440 at 49.101 kb on - strand, within PGA1_c00440 at 49.108 kb on + strand, within PGA1_c00440 at 49.116 kb on - strand, within PGA1_c00440 at 49.130 kb on + strand, within PGA1_c00440 at 49.138 kb on - strand, within PGA1_c00440 at 49.138 kb on - strand, within PGA1_c00440 at 49.138 kb on - strand, within PGA1_c00440 at 49.138 kb on - strand, within PGA1_c00440 at 49.142 kb on + strand, within PGA1_c00440 at 49.151 kb on - strand, within PGA1_c00440 at 49.174 kb on + strand, within PGA1_c00440 at 49.229 kb on + strand, within PGA1_c00440 at 49.269 kb on + strand, within PGA1_c00440 at 49.269 kb on + strand, within PGA1_c00440 at 49.269 kb on + strand, within PGA1_c00440 at 49.269 kb on + strand, within PGA1_c00440 at 49.274 kb on + strand, within PGA1_c00440 at 49.277 kb on - strand, within PGA1_c00440 at 49.279 kb on + strand, within PGA1_c00440 at 49.279 kb on + strand, within PGA1_c00440 at 49.282 kb on - strand, within PGA1_c00440 at 49.287 kb on - strand, within PGA1_c00440 at 49.287 kb on - strand, within PGA1_c00440 at 49.287 kb on - strand, within PGA1_c00440 at 49.333 kb on + strand, within PGA1_c00440 at 49.338 kb on + strand, within PGA1_c00440 at 49.356 kb on - strand, within PGA1_c00440 at 49.356 kb on - strand, within PGA1_c00440 at 49.451 kb on + strand, within PGA1_c00440 at 49.453 kb on + strand, within PGA1_c00440 at 49.453 kb on + strand, within PGA1_c00440 at 49.506 kb on - strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.557 kb on - strand, within PGA1_c00440 at 49.557 kb on - strand, within PGA1_c00440 at 49.600 kb on - strand, within PGA1_c00440 at 49.621 kb on - strand, within PGA1_c00440 at 49.629 kb on + strand, within PGA1_c00440 at 49.633 kb on + strand, within PGA1_c00440 at 49.637 kb on - strand, within PGA1_c00440 at 49.637 kb on - strand, within PGA1_c00440 at 49.693 kb on + strand, within PGA1_c00440 at 49.698 kb on - strand, within PGA1_c00440 at 49.712 kb on + strand, within PGA1_c00440 at 49.716 kb on + strand, within PGA1_c00440 at 49.771 kb on - strand, within PGA1_c00440 at 49.777 kb on - strand, within PGA1_c00440 at 49.833 kb on - strand, within PGA1_c00440 at 49.844 kb on + strand, within PGA1_c00440 at 49.852 kb on - strand, within PGA1_c00440 at 49.862 kb on + strand, within PGA1_c00440 at 49.878 kb on - strand, within PGA1_c00440 at 49.878 kb on - strand, within PGA1_c00440 at 49.878 kb on - strand, within PGA1_c00440 at 49.906 kb on + strand, within PGA1_c00440 at 49.909 kb on - strand, within PGA1_c00440 at 49.914 kb on - strand, within PGA1_c00440 at 49.914 kb on - strand, within PGA1_c00440 at 49.916 kb on + strand, within PGA1_c00440 at 49.919 kb on - strand, within PGA1_c00440 at 49.921 kb on + strand, within PGA1_c00440 at 49.924 kb on - strand, within PGA1_c00440 at 49.968 kb on - strand, within PGA1_c00440 at 49.968 kb on - strand, within PGA1_c00440 at 49.979 kb on + strand, within PGA1_c00440 at 50.000 kb on - strand, within PGA1_c00440 at 50.035 kb on + strand, within PGA1_c00440 at 50.044 kb on - strand, within PGA1_c00440 at 50.044 kb on - strand, within PGA1_c00440 at 50.045 kb on + strand, within PGA1_c00440 at 50.045 kb on + strand, within PGA1_c00440 at 50.045 kb on + strand, within PGA1_c00440 at 50.046 kb on + strand, within PGA1_c00440 at 50.053 kb on - strand, within PGA1_c00440 at 50.058 kb on + strand, within PGA1_c00440 at 50.058 kb on + strand, within PGA1_c00440 at 50.060 kb on + strand, within PGA1_c00440 at 50.060 kb on + strand, within PGA1_c00440 at 50.066 kb on - strand, within PGA1_c00440 at 50.066 kb on - strand, within PGA1_c00440 at 50.105 kb on + strand at 50.113 kb on - strand at 50.113 kb on - strand at 50.119 kb on + strand at 50.120 kb on - strand at 50.124 kb on - strand at 50.130 kb on + strand at 50.131 kb on - strand at 50.132 kb on - strand at 50.168 kb on + strand at 50.178 kb on + strand at 50.186 kb on - strand at 50.196 kb on - strand at 50.202 kb on + strand at 50.219 kb on + strand at 50.219 kb on + strand at 50.227 kb on - strand at 50.248 kb on + strand at 50.268 kb on - strand at 50.298 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.363 kb on + strand, within PGA1_c00450 at 50.363 kb on + strand, within PGA1_c00450 at 50.371 kb on + strand, within PGA1_c00450 at 50.384 kb on - strand, within PGA1_c00450 at 50.467 kb on - strand, within PGA1_c00450 at 50.482 kb on - strand, within PGA1_c00450 at 50.557 kb on + strand, within PGA1_c00450 at 50.562 kb on + strand, within PGA1_c00450 at 50.603 kb on + strand, within PGA1_c00450 at 50.629 kb on - strand, within PGA1_c00450 at 50.677 kb on - strand, within PGA1_c00450 at 50.704 kb on + strand, within PGA1_c00450 at 50.709 kb on + strand, within PGA1_c00450 at 50.722 kb on - strand at 50.734 kb on - strand at 50.776 kb on + strand at 50.784 kb on - strand at 50.794 kb on + strand at 50.802 kb on - strand at 50.857 kb on + strand at 50.857 kb on + strand at 50.859 kb on + strand at 50.865 kb on - strand at 50.867 kb on - strand at 50.867 kb on - strand at 50.867 kb on - strand at 50.875 kb on + strand at 50.881 kb on + strand at 50.881 kb on + strand at 50.883 kb on - strand at 50.889 kb on - strand at 50.916 kb on - strand at 50.934 kb on + strand, within PGA1_c00460 at 51.016 kb on - strand, within PGA1_c00460 at 51.049 kb on - strand, within PGA1_c00460 at 51.051 kb on - strand, within PGA1_c00460 at 51.084 kb on - strand, within PGA1_c00460 at 51.118 kb on - strand, within PGA1_c00460 at 51.118 kb on - strand, within PGA1_c00460 at 51.135 kb on + strand, within PGA1_c00460 at 51.163 kb on + strand, within PGA1_c00460 at 51.173 kb on + strand, within PGA1_c00460 at 51.173 kb on + strand, within PGA1_c00460 at 51.198 kb on - strand, within PGA1_c00460 at 51.233 kb on + strand, within PGA1_c00460 at 51.239 kb on - strand, within PGA1_c00460 at 51.239 kb on - strand, within PGA1_c00460
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 47,887 + PGA1_c00430 0.30 -0.1 47,925 - PGA1_c00430 0.33 +0.3 48,002 - PGA1_c00430 0.39 +0.8 48,059 + PGA1_c00430 0.43 -0.8 48,067 - PGA1_c00430 0.44 +0.5 48,067 - PGA1_c00430 0.44 +0.0 48,067 - PGA1_c00430 0.44 -0.8 48,161 - PGA1_c00430 0.51 +0.7 48,249 - PGA1_c00430 0.58 +0.2 48,285 - PGA1_c00430 0.61 +0.7 48,287 + PGA1_c00430 0.61 -0.0 48,356 - PGA1_c00430 0.67 -0.0 48,367 + PGA1_c00430 0.68 -0.1 48,380 + PGA1_c00430 0.69 -0.3 48,390 + PGA1_c00430 0.70 +0.0 48,405 - PGA1_c00430 0.71 +0.4 48,523 + PGA1_c00430 0.80 +0.4 48,523 + PGA1_c00430 0.80 -1.0 48,526 - PGA1_c00430 0.80 +0.4 48,559 + PGA1_c00430 0.83 +0.5 48,591 - PGA1_c00430 0.86 +0.3 48,660 + +0.7 48,704 - -0.9 48,717 + -0.6 48,730 - -0.7 48,751 + +0.3 48,851 - -0.5 48,856 - -0.2 48,982 - +0.5 49,017 + PGA1_c00440 0.10 -0.3 49,093 + PGA1_c00440 0.16 -0.3 49,093 + PGA1_c00440 0.16 -0.7 49,101 - PGA1_c00440 0.16 -0.8 49,101 - PGA1_c00440 0.16 +0.4 49,108 + PGA1_c00440 0.17 +0.8 49,116 - PGA1_c00440 0.17 +0.9 49,130 + PGA1_c00440 0.19 -0.7 49,138 - PGA1_c00440 0.19 -2.1 49,138 - PGA1_c00440 0.19 -0.5 49,138 - PGA1_c00440 0.19 -0.0 49,138 - PGA1_c00440 0.19 +0.2 49,142 + PGA1_c00440 0.19 -0.6 49,151 - PGA1_c00440 0.20 -1.6 49,174 + PGA1_c00440 0.22 +0.6 49,229 + PGA1_c00440 0.26 +0.1 49,269 + PGA1_c00440 0.29 +0.5 49,269 + PGA1_c00440 0.29 -0.7 49,269 + PGA1_c00440 0.29 +0.1 49,269 + PGA1_c00440 0.29 +0.4 49,274 + PGA1_c00440 0.29 +0.3 49,277 - PGA1_c00440 0.29 +0.3 49,279 + PGA1_c00440 0.29 +0.6 49,279 + PGA1_c00440 0.29 +1.0 49,282 - PGA1_c00440 0.30 +1.1 49,287 - PGA1_c00440 0.30 -2.1 49,287 - PGA1_c00440 0.30 -0.9 49,287 - PGA1_c00440 0.30 +0.4 49,333 + PGA1_c00440 0.33 -0.2 49,338 + PGA1_c00440 0.34 -0.4 49,356 - PGA1_c00440 0.35 +1.4 49,356 - PGA1_c00440 0.35 +0.5 49,451 + PGA1_c00440 0.42 +0.5 49,453 + PGA1_c00440 0.42 +1.2 49,453 + PGA1_c00440 0.42 -0.4 49,506 - PGA1_c00440 0.46 -0.7 49,549 + PGA1_c00440 0.49 -0.3 49,549 + PGA1_c00440 0.49 +0.2 49,549 + PGA1_c00440 0.49 -1.3 49,549 + PGA1_c00440 0.49 -0.3 49,549 + PGA1_c00440 0.49 -0.5 49,557 - PGA1_c00440 0.50 -0.3 49,557 - PGA1_c00440 0.50 +0.2 49,600 - PGA1_c00440 0.53 +0.0 49,621 - PGA1_c00440 0.55 -2.0 49,629 + PGA1_c00440 0.55 +0.4 49,633 + PGA1_c00440 0.55 -0.3 49,637 - PGA1_c00440 0.56 +0.4 49,637 - PGA1_c00440 0.56 -0.2 49,693 + PGA1_c00440 0.60 -0.5 49,698 - PGA1_c00440 0.60 +1.0 49,712 + PGA1_c00440 0.61 -1.5 49,716 + PGA1_c00440 0.62 +0.1 49,771 - PGA1_c00440 0.66 +0.5 49,777 - PGA1_c00440 0.66 -0.3 49,833 - PGA1_c00440 0.70 +0.9 49,844 + PGA1_c00440 0.71 +0.4 49,852 - PGA1_c00440 0.72 +0.2 49,862 + PGA1_c00440 0.72 +1.3 49,878 - PGA1_c00440 0.73 +0.0 49,878 - PGA1_c00440 0.73 +0.8 49,878 - PGA1_c00440 0.73 -1.3 49,906 + PGA1_c00440 0.75 -0.6 49,909 - PGA1_c00440 0.76 -0.1 49,914 - PGA1_c00440 0.76 +0.2 49,914 - PGA1_c00440 0.76 -1.0 49,916 + PGA1_c00440 0.76 -0.6 49,919 - PGA1_c00440 0.76 -1.1 49,921 + PGA1_c00440 0.77 +0.7 49,924 - PGA1_c00440 0.77 -0.0 49,968 - PGA1_c00440 0.80 +0.0 49,968 - PGA1_c00440 0.80 +0.1 49,979 + PGA1_c00440 0.81 -0.1 50,000 - PGA1_c00440 0.82 +0.1 50,035 + PGA1_c00440 0.85 -0.0 50,044 - PGA1_c00440 0.86 -0.4 50,044 - PGA1_c00440 0.86 -0.8 50,045 + PGA1_c00440 0.86 +0.6 50,045 + PGA1_c00440 0.86 +0.5 50,045 + PGA1_c00440 0.86 -1.3 50,046 + PGA1_c00440 0.86 +0.4 50,053 - PGA1_c00440 0.86 +1.3 50,058 + PGA1_c00440 0.87 -1.0 50,058 + PGA1_c00440 0.87 -0.2 50,060 + PGA1_c00440 0.87 +0.1 50,060 + PGA1_c00440 0.87 -0.0 50,066 - PGA1_c00440 0.87 +0.2 50,066 - PGA1_c00440 0.87 +0.4 50,105 + -0.4 50,113 - +0.2 50,113 - -0.3 50,119 + -0.1 50,120 - +0.2 50,124 - -0.3 50,130 + -0.2 50,131 - +0.0 50,132 - -0.7 50,168 + +1.5 50,178 + -0.6 50,186 - -0.1 50,196 - -0.4 50,202 + +0.2 50,219 + -0.2 50,219 + -1.1 50,227 - -1.1 50,248 + -0.3 50,268 - +0.7 50,298 + -0.6 50,303 + -0.2 50,303 + -1.1 50,303 + -1.0 50,303 + +0.7 50,303 + -1.3 50,303 + +0.5 50,303 + +1.0 50,303 + +1.3 50,303 + +0.0 50,303 + -0.6 50,303 + -0.1 50,303 + +0.3 50,303 + -1.3 50,311 - -0.0 50,311 - +0.2 50,311 - +0.3 50,311 - -0.4 50,311 - +0.0 50,311 - +0.4 50,311 - -1.3 50,311 - +0.7 50,311 - -1.0 50,311 - -1.3 50,311 - +0.8 50,311 - +0.3 50,311 - -0.3 50,311 - -0.5 50,311 - +0.6 50,363 + PGA1_c00450 0.11 +0.1 50,363 + PGA1_c00450 0.11 +0.3 50,371 + PGA1_c00450 0.13 +0.2 50,384 - PGA1_c00450 0.16 -0.6 50,467 - PGA1_c00450 0.35 +0.2 50,482 - PGA1_c00450 0.38 +0.5 50,557 + PGA1_c00450 0.55 -0.8 50,562 + PGA1_c00450 0.56 -0.5 50,603 + PGA1_c00450 0.66 +0.5 50,629 - PGA1_c00450 0.72 +0.1 50,677 - PGA1_c00450 0.83 +0.7 50,704 + PGA1_c00450 0.89 +1.0 50,709 + PGA1_c00450 0.90 -0.2 50,722 - +0.3 50,734 - +0.8 50,776 + -0.1 50,784 - +0.1 50,794 + +1.4 50,802 - +1.0 50,857 + +0.0 50,857 + -0.8 50,859 + -0.5 50,865 - +0.2 50,867 - -2.1 50,867 - +0.8 50,867 - -0.6 50,875 + -0.6 50,881 + -1.3 50,881 + -0.6 50,883 - -1.1 50,889 - +0.4 50,916 - -0.1 50,934 + PGA1_c00460 0.10 +0.7 51,016 - PGA1_c00460 0.17 +0.1 51,049 - PGA1_c00460 0.20 -0.1 51,051 - PGA1_c00460 0.20 -1.1 51,084 - PGA1_c00460 0.22 -0.6 51,118 - PGA1_c00460 0.25 -0.0 51,118 - PGA1_c00460 0.25 +0.3 51,135 + PGA1_c00460 0.27 -0.8 51,163 + PGA1_c00460 0.29 -0.1 51,173 + PGA1_c00460 0.30 +0.2 51,173 + PGA1_c00460 0.30 -1.0 51,198 - PGA1_c00460 0.32 -0.1 51,233 + PGA1_c00460 0.35 -0.9 51,239 - PGA1_c00460 0.35 -0.3 51,239 - PGA1_c00460 0.35 -1.3
Or see this region's nucleotide sequence