Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g23 and HP15_p42g24 overlap by 4 nucleotides HP15_p42g24 and HP15_p42g25 are separated by 18 nucleotides
HP15_p42g23: HP15_p42g23 - TRAG family protein, at 17,183 to 19,090
_p42g23
HP15_p42g24: HP15_p42g24 - peptidase S26C, conjugative transfer signal peptidase TraF, at 19,087 to 19,623
_p42g24
HP15_p42g25: HP15_p42g25 - DNA topoisomerase III, at 19,642 to 21,702
_p42g25
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.177 kb on + strand, within HP15_p42g23 at 18.210 kb on + strand, within HP15_p42g23 at 18.245 kb on + strand, within HP15_p42g23 at 18.245 kb on - strand, within HP15_p42g23 at 18.277 kb on + strand, within HP15_p42g23 at 18.277 kb on + strand, within HP15_p42g23 at 18.277 kb on + strand, within HP15_p42g23 at 18.287 kb on + strand, within HP15_p42g23 at 18.295 kb on - strand, within HP15_p42g23 at 18.295 kb on - strand, within HP15_p42g23 at 18.319 kb on + strand, within HP15_p42g23 at 18.329 kb on + strand, within HP15_p42g23 at 18.414 kb on - strand, within HP15_p42g23 at 18.510 kb on - strand, within HP15_p42g23 at 18.537 kb on + strand, within HP15_p42g23 at 18.545 kb on - strand, within HP15_p42g23 at 18.623 kb on + strand, within HP15_p42g23 at 18.624 kb on + strand, within HP15_p42g23 at 18.660 kb on + strand, within HP15_p42g23 at 18.680 kb on - strand, within HP15_p42g23 at 18.854 kb on + strand, within HP15_p42g23 at 18.869 kb on - strand, within HP15_p42g23 at 18.992 kb on - strand at 19.046 kb on - strand at 19.065 kb on + strand at 19.169 kb on - strand, within HP15_p42g24 at 19.179 kb on - strand, within HP15_p42g24 at 19.220 kb on - strand, within HP15_p42g24 at 19.223 kb on - strand, within HP15_p42g24 at 19.268 kb on - strand, within HP15_p42g24 at 19.268 kb on - strand, within HP15_p42g24 at 19.292 kb on + strand, within HP15_p42g24 at 19.294 kb on + strand, within HP15_p42g24 at 19.300 kb on - strand, within HP15_p42g24 at 19.300 kb on - strand, within HP15_p42g24 at 19.302 kb on - strand, within HP15_p42g24 at 19.388 kb on + strand, within HP15_p42g24 at 19.434 kb on + strand, within HP15_p42g24 at 19.434 kb on + strand, within HP15_p42g24 at 19.451 kb on - strand, within HP15_p42g24 at 19.451 kb on - strand, within HP15_p42g24 at 19.451 kb on - strand, within HP15_p42g24 at 19.464 kb on - strand, within HP15_p42g24 at 19.501 kb on - strand, within HP15_p42g24 at 19.503 kb on + strand, within HP15_p42g24 at 19.508 kb on + strand, within HP15_p42g24 at 19.508 kb on + strand, within HP15_p42g24 at 19.508 kb on + strand, within HP15_p42g24 at 19.526 kb on + strand, within HP15_p42g24 at 19.570 kb on - strand at 19.577 kb on + strand at 19.636 kb on - strand at 19.694 kb on + strand at 19.695 kb on - strand at 19.713 kb on + strand at 19.713 kb on + strand at 19.729 kb on + strand at 19.794 kb on + strand at 19.797 kb on - strand at 19.807 kb on - strand at 19.807 kb on - strand at 19.901 kb on - strand, within HP15_p42g25 at 19.932 kb on + strand, within HP15_p42g25 at 19.940 kb on - strand, within HP15_p42g25 at 19.988 kb on - strand, within HP15_p42g25 at 20.131 kb on + strand, within HP15_p42g25 at 20.131 kb on + strand, within HP15_p42g25 at 20.137 kb on - strand, within HP15_p42g25 at 20.139 kb on - strand, within HP15_p42g25 at 20.139 kb on - strand, within HP15_p42g25 at 20.148 kb on + strand, within HP15_p42g25 at 20.165 kb on + strand, within HP15_p42g25 at 20.165 kb on + strand, within HP15_p42g25 at 20.165 kb on + strand, within HP15_p42g25 at 20.191 kb on - strand, within HP15_p42g25 at 20.218 kb on - strand, within HP15_p42g25 at 20.218 kb on - strand, within HP15_p42g25 at 20.218 kb on - strand, within HP15_p42g25 at 20.218 kb on - strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.246 kb on + strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.254 kb on - strand, within HP15_p42g25 at 20.266 kb on - strand, within HP15_p42g25 at 20.292 kb on + strand, within HP15_p42g25 at 20.400 kb on + strand, within HP15_p42g25 at 20.405 kb on + strand, within HP15_p42g25 at 20.407 kb on + strand, within HP15_p42g25 at 20.413 kb on - strand, within HP15_p42g25 at 20.415 kb on - strand, within HP15_p42g25 at 20.464 kb on - strand, within HP15_p42g25 at 20.465 kb on - strand, within HP15_p42g25 at 20.513 kb on + strand, within HP15_p42g25 at 20.513 kb on + strand, within HP15_p42g25 at 20.521 kb on - strand, within HP15_p42g25 at 20.521 kb on - strand, within HP15_p42g25 at 20.578 kb on + strand, within HP15_p42g25 at 20.578 kb on + strand, within HP15_p42g25 at 20.606 kb on + strand, within HP15_p42g25 at 20.611 kb on + strand, within HP15_p42g25
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 18,177 + HP15_p42g23 0.52 +0.1 18,210 + HP15_p42g23 0.54 +0.7 18,245 + HP15_p42g23 0.56 +0.9 18,245 - HP15_p42g23 0.56 +0.2 18,277 + HP15_p42g23 0.57 +0.1 18,277 + HP15_p42g23 0.57 -0.4 18,277 + HP15_p42g23 0.57 -0.5 18,287 + HP15_p42g23 0.58 -0.2 18,295 - HP15_p42g23 0.58 -0.9 18,295 - HP15_p42g23 0.58 -0.1 18,319 + HP15_p42g23 0.60 -0.9 18,329 + HP15_p42g23 0.60 +0.2 18,414 - HP15_p42g23 0.65 +0.7 18,510 - HP15_p42g23 0.70 +0.1 18,537 + HP15_p42g23 0.71 +0.5 18,545 - HP15_p42g23 0.71 +0.4 18,623 + HP15_p42g23 0.75 -0.6 18,624 + HP15_p42g23 0.76 +0.8 18,660 + HP15_p42g23 0.77 +0.1 18,680 - HP15_p42g23 0.78 -0.3 18,854 + HP15_p42g23 0.88 +0.7 18,869 - HP15_p42g23 0.88 -0.1 18,992 - -0.1 19,046 - -0.0 19,065 + -0.2 19,169 - HP15_p42g24 0.15 +0.4 19,179 - HP15_p42g24 0.17 +0.0 19,220 - HP15_p42g24 0.25 +1.0 19,223 - HP15_p42g24 0.25 -0.9 19,268 - HP15_p42g24 0.34 +0.2 19,268 - HP15_p42g24 0.34 +0.2 19,292 + HP15_p42g24 0.38 +0.2 19,294 + HP15_p42g24 0.39 +1.2 19,300 - HP15_p42g24 0.40 -1.9 19,300 - HP15_p42g24 0.40 -0.1 19,302 - HP15_p42g24 0.40 -0.2 19,388 + HP15_p42g24 0.56 +0.0 19,434 + HP15_p42g24 0.65 +0.7 19,434 + HP15_p42g24 0.65 +1.3 19,451 - HP15_p42g24 0.68 -0.1 19,451 - HP15_p42g24 0.68 +0.5 19,451 - HP15_p42g24 0.68 +1.1 19,464 - HP15_p42g24 0.70 -1.1 19,501 - HP15_p42g24 0.77 -0.2 19,503 + HP15_p42g24 0.77 +0.9 19,508 + HP15_p42g24 0.78 +0.8 19,508 + HP15_p42g24 0.78 +0.6 19,508 + HP15_p42g24 0.78 +1.4 19,526 + HP15_p42g24 0.82 +0.2 19,570 - -1.2 19,577 + +0.6 19,636 - +0.5 19,694 + +0.7 19,695 - -0.5 19,713 + +1.1 19,713 + +0.1 19,729 + +0.8 19,794 + -0.1 19,797 - -0.1 19,807 - -0.1 19,807 - -0.5 19,901 - HP15_p42g25 0.13 +0.1 19,932 + HP15_p42g25 0.14 +0.3 19,940 - HP15_p42g25 0.14 -1.5 19,988 - HP15_p42g25 0.17 -0.6 20,131 + HP15_p42g25 0.24 -0.0 20,131 + HP15_p42g25 0.24 +0.9 20,137 - HP15_p42g25 0.24 -0.7 20,139 - HP15_p42g25 0.24 -0.1 20,139 - HP15_p42g25 0.24 +0.1 20,148 + HP15_p42g25 0.25 -0.3 20,165 + HP15_p42g25 0.25 -0.1 20,165 + HP15_p42g25 0.25 +0.2 20,165 + HP15_p42g25 0.25 -0.1 20,191 - HP15_p42g25 0.27 -0.1 20,218 - HP15_p42g25 0.28 +0.1 20,218 - HP15_p42g25 0.28 -1.0 20,218 - HP15_p42g25 0.28 +0.4 20,218 - HP15_p42g25 0.28 -0.4 20,246 + HP15_p42g25 0.29 +0.1 20,246 + HP15_p42g25 0.29 +0.0 20,246 + HP15_p42g25 0.29 +0.4 20,246 + HP15_p42g25 0.29 +0.0 20,246 + HP15_p42g25 0.29 -0.8 20,246 + HP15_p42g25 0.29 -0.5 20,246 + HP15_p42g25 0.29 +1.1 20,246 + HP15_p42g25 0.29 -0.5 20,246 + HP15_p42g25 0.29 +0.5 20,246 + HP15_p42g25 0.29 -0.2 20,246 + HP15_p42g25 0.29 +0.6 20,254 - HP15_p42g25 0.30 +1.8 20,254 - HP15_p42g25 0.30 +0.6 20,254 - HP15_p42g25 0.30 -1.3 20,254 - HP15_p42g25 0.30 +0.9 20,254 - HP15_p42g25 0.30 -0.2 20,266 - HP15_p42g25 0.30 +1.3 20,292 + HP15_p42g25 0.32 +0.2 20,400 + HP15_p42g25 0.37 +0.2 20,405 + HP15_p42g25 0.37 +0.2 20,407 + HP15_p42g25 0.37 +0.4 20,413 - HP15_p42g25 0.37 -1.1 20,415 - HP15_p42g25 0.38 +0.4 20,464 - HP15_p42g25 0.40 +1.7 20,465 - HP15_p42g25 0.40 +0.4 20,513 + HP15_p42g25 0.42 -0.9 20,513 + HP15_p42g25 0.42 +0.1 20,521 - HP15_p42g25 0.43 -0.3 20,521 - HP15_p42g25 0.43 -0.2 20,578 + HP15_p42g25 0.45 +0.6 20,578 + HP15_p42g25 0.45 -0.1 20,606 + HP15_p42g25 0.47 -0.4 20,611 + HP15_p42g25 0.47 -0.0
Or see this region's nucleotide sequence