Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4093 and HP15_4094 overlap by 21 nucleotides HP15_4094 and HP15_4095 are separated by 248 nucleotides
HP15_4093: HP15_4093 - membrane protein containing diguanylate cyclase, predicted domains, at 4,327,236 to 4,328,426
_4093
HP15_4094: HP15_4094 - enoyl-CoA hydratase/isomerase, at 4,328,406 to 4,329,200
_4094
HP15_4095: HP15_4095 - branched-chain amino acid ABC transporter, ATP-binding protein, at 4,329,449 to 4,330,264
_4095
Position (kb)
4328
4329
4330 Strain fitness (log2 ratio)
-1
0
1 at 4327.447 kb on - strand, within HP15_4093 at 4327.500 kb on - strand, within HP15_4093 at 4327.500 kb on - strand, within HP15_4093 at 4327.506 kb on + strand, within HP15_4093 at 4327.593 kb on + strand, within HP15_4093 at 4327.651 kb on - strand, within HP15_4093 at 4327.735 kb on - strand, within HP15_4093 at 4327.878 kb on + strand, within HP15_4093 at 4327.901 kb on - strand, within HP15_4093 at 4327.906 kb on - strand, within HP15_4093 at 4327.935 kb on - strand, within HP15_4093 at 4327.988 kb on + strand, within HP15_4093 at 4328.198 kb on + strand, within HP15_4093 at 4328.228 kb on + strand, within HP15_4093 at 4328.307 kb on - strand, within HP15_4093 at 4328.327 kb on - strand at 4328.331 kb on - strand at 4328.506 kb on + strand, within HP15_4094 at 4328.506 kb on + strand, within HP15_4094 at 4328.514 kb on - strand, within HP15_4094 at 4328.514 kb on - strand, within HP15_4094 at 4328.541 kb on - strand, within HP15_4094 at 4328.552 kb on - strand, within HP15_4094 at 4328.579 kb on - strand, within HP15_4094 at 4328.579 kb on - strand, within HP15_4094 at 4328.585 kb on - strand, within HP15_4094 at 4328.771 kb on - strand, within HP15_4094 at 4328.847 kb on + strand, within HP15_4094 at 4328.848 kb on - strand, within HP15_4094 at 4328.848 kb on - strand, within HP15_4094 at 4328.872 kb on + strand, within HP15_4094 at 4328.872 kb on + strand, within HP15_4094 at 4328.945 kb on - strand, within HP15_4094 at 4328.977 kb on - strand, within HP15_4094 at 4328.999 kb on - strand, within HP15_4094 at 4329.038 kb on - strand, within HP15_4094 at 4329.117 kb on + strand, within HP15_4094 at 4329.117 kb on + strand, within HP15_4094 at 4329.244 kb on - strand at 4329.286 kb on - strand at 4329.433 kb on - strand at 4329.619 kb on - strand, within HP15_4095 at 4329.638 kb on + strand, within HP15_4095 at 4329.657 kb on + strand, within HP15_4095 at 4329.660 kb on - strand, within HP15_4095 at 4329.680 kb on + strand, within HP15_4095 at 4329.680 kb on + strand, within HP15_4095 at 4329.689 kb on - strand, within HP15_4095 at 4329.718 kb on + strand, within HP15_4095 at 4329.718 kb on + strand, within HP15_4095 at 4329.726 kb on - strand, within HP15_4095 at 4329.744 kb on + strand, within HP15_4095 at 4329.752 kb on - strand, within HP15_4095 at 4329.752 kb on - strand, within HP15_4095 at 4329.752 kb on - strand, within HP15_4095 at 4329.775 kb on - strand, within HP15_4095 at 4329.784 kb on + strand, within HP15_4095 at 4329.789 kb on + strand, within HP15_4095 at 4329.792 kb on - strand, within HP15_4095 at 4329.851 kb on - strand, within HP15_4095 at 4329.920 kb on + strand, within HP15_4095 at 4329.931 kb on + strand, within HP15_4095 at 4330.060 kb on - strand, within HP15_4095 at 4330.084 kb on + strand, within HP15_4095 at 4330.090 kb on + strand, within HP15_4095 at 4330.126 kb on + strand, within HP15_4095 at 4330.177 kb on - strand, within HP15_4095 at 4330.177 kb on - strand, within HP15_4095 at 4330.179 kb on + strand, within HP15_4095 at 4330.187 kb on - strand at 4330.194 kb on + strand at 4330.195 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 4,327,447 - HP15_4093 0.18 +0.5 4,327,500 - HP15_4093 0.22 +0.8 4,327,500 - HP15_4093 0.22 +0.2 4,327,506 + HP15_4093 0.23 -0.2 4,327,593 + HP15_4093 0.30 +0.9 4,327,651 - HP15_4093 0.35 -0.3 4,327,735 - HP15_4093 0.42 +0.4 4,327,878 + HP15_4093 0.54 +0.5 4,327,901 - HP15_4093 0.56 -0.1 4,327,906 - HP15_4093 0.56 +0.1 4,327,935 - HP15_4093 0.59 -0.0 4,327,988 + HP15_4093 0.63 +0.1 4,328,198 + HP15_4093 0.81 -0.9 4,328,228 + HP15_4093 0.83 +0.2 4,328,307 - HP15_4093 0.90 +0.7 4,328,327 - +0.3 4,328,331 - +0.3 4,328,506 + HP15_4094 0.13 +0.2 4,328,506 + HP15_4094 0.13 +0.1 4,328,514 - HP15_4094 0.14 +0.0 4,328,514 - HP15_4094 0.14 -0.4 4,328,541 - HP15_4094 0.17 +0.1 4,328,552 - HP15_4094 0.18 +0.2 4,328,579 - HP15_4094 0.22 -0.0 4,328,579 - HP15_4094 0.22 -0.6 4,328,585 - HP15_4094 0.23 +0.6 4,328,771 - HP15_4094 0.46 -0.7 4,328,847 + HP15_4094 0.55 +0.1 4,328,848 - HP15_4094 0.56 +0.2 4,328,848 - HP15_4094 0.56 +0.5 4,328,872 + HP15_4094 0.59 -0.5 4,328,872 + HP15_4094 0.59 +1.0 4,328,945 - HP15_4094 0.68 +0.6 4,328,977 - HP15_4094 0.72 -0.9 4,328,999 - HP15_4094 0.75 +0.1 4,329,038 - HP15_4094 0.79 -0.1 4,329,117 + HP15_4094 0.89 +0.3 4,329,117 + HP15_4094 0.89 +0.7 4,329,244 - +1.0 4,329,286 - -0.6 4,329,433 - -0.7 4,329,619 - HP15_4095 0.21 +0.0 4,329,638 + HP15_4095 0.23 +0.7 4,329,657 + HP15_4095 0.25 -0.4 4,329,660 - HP15_4095 0.26 -0.3 4,329,680 + HP15_4095 0.28 +0.5 4,329,680 + HP15_4095 0.28 +0.6 4,329,689 - HP15_4095 0.29 -0.2 4,329,718 + HP15_4095 0.33 -0.2 4,329,718 + HP15_4095 0.33 -0.0 4,329,726 - HP15_4095 0.34 +0.2 4,329,744 + HP15_4095 0.36 +0.8 4,329,752 - HP15_4095 0.37 +0.1 4,329,752 - HP15_4095 0.37 -0.5 4,329,752 - HP15_4095 0.37 -0.5 4,329,775 - HP15_4095 0.40 +0.1 4,329,784 + HP15_4095 0.41 +1.2 4,329,789 + HP15_4095 0.42 -0.8 4,329,792 - HP15_4095 0.42 +0.1 4,329,851 - HP15_4095 0.49 +0.4 4,329,920 + HP15_4095 0.58 +1.4 4,329,931 + HP15_4095 0.59 -0.5 4,330,060 - HP15_4095 0.75 -0.1 4,330,084 + HP15_4095 0.78 -0.1 4,330,090 + HP15_4095 0.79 +0.1 4,330,126 + HP15_4095 0.83 +1.1 4,330,177 - HP15_4095 0.89 -0.6 4,330,177 - HP15_4095 0.89 +0.7 4,330,179 + HP15_4095 0.89 +0.8 4,330,187 - -0.2 4,330,194 + -0.0 4,330,195 + +0.4
Or see this region's nucleotide sequence