Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3978 and HP15_3979 are separated by 81 nucleotides HP15_3979 and HP15_3980 are separated by 11 nucleotides
HP15_3978: HP15_3978 - sulfate permease, at 4,208,379 to 4,210,112
_3978
HP15_3979: HP15_3979 - membrane protein, at 4,210,194 to 4,210,853
_3979
HP15_3980: HP15_3980 - diguanylate cyclase/phosphodiesterase, at 4,210,865 to 4,212,996
_3980
Position (kb)
4210
4211 Strain fitness (log2 ratio)
-2
-1
0
1 at 4209.216 kb on - strand, within HP15_3978 at 4209.241 kb on + strand, within HP15_3978 at 4209.245 kb on + strand, within HP15_3978 at 4209.297 kb on + strand, within HP15_3978 at 4209.315 kb on - strand, within HP15_3978 at 4209.362 kb on - strand, within HP15_3978 at 4209.385 kb on - strand, within HP15_3978 at 4209.405 kb on + strand, within HP15_3978 at 4209.603 kb on + strand, within HP15_3978 at 4209.615 kb on + strand, within HP15_3978 at 4209.732 kb on - strand, within HP15_3978 at 4209.744 kb on + strand, within HP15_3978 at 4209.745 kb on + strand, within HP15_3978 at 4209.836 kb on - strand, within HP15_3978 at 4209.936 kb on - strand, within HP15_3978 at 4210.139 kb on - strand at 4210.287 kb on - strand, within HP15_3979 at 4210.330 kb on - strand, within HP15_3979 at 4210.367 kb on + strand, within HP15_3979 at 4210.428 kb on - strand, within HP15_3979 at 4210.508 kb on + strand, within HP15_3979 at 4210.671 kb on + strand, within HP15_3979 at 4210.901 kb on - strand at 4210.950 kb on - strand at 4210.952 kb on + strand at 4210.989 kb on + strand at 4211.014 kb on + strand at 4211.038 kb on + strand at 4211.055 kb on + strand at 4211.055 kb on + strand at 4211.083 kb on - strand, within HP15_3980 at 4211.194 kb on + strand, within HP15_3980 at 4211.194 kb on + strand, within HP15_3980 at 4211.367 kb on + strand, within HP15_3980 at 4211.417 kb on - strand, within HP15_3980 at 4211.417 kb on - strand, within HP15_3980 at 4211.475 kb on - strand, within HP15_3980 at 4211.577 kb on - strand, within HP15_3980 at 4211.632 kb on - strand, within HP15_3980 at 4211.712 kb on + strand, within HP15_3980 at 4211.767 kb on + strand, within HP15_3980 at 4211.767 kb on + strand, within HP15_3980 at 4211.767 kb on + strand, within HP15_3980 at 4211.776 kb on - strand, within HP15_3980 at 4211.841 kb on + strand, within HP15_3980
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 4,209,216 - HP15_3978 0.48 +0.5 4,209,241 + HP15_3978 0.50 +0.1 4,209,245 + HP15_3978 0.50 +0.7 4,209,297 + HP15_3978 0.53 +0.3 4,209,315 - HP15_3978 0.54 +0.6 4,209,362 - HP15_3978 0.57 -0.4 4,209,385 - HP15_3978 0.58 -0.7 4,209,405 + HP15_3978 0.59 +0.9 4,209,603 + HP15_3978 0.71 +0.6 4,209,615 + HP15_3978 0.71 +0.7 4,209,732 - HP15_3978 0.78 +0.6 4,209,744 + HP15_3978 0.79 +0.2 4,209,745 + HP15_3978 0.79 -0.9 4,209,836 - HP15_3978 0.84 -0.2 4,209,936 - HP15_3978 0.90 +0.5 4,210,139 - -0.2 4,210,287 - HP15_3979 0.14 -0.5 4,210,330 - HP15_3979 0.21 -2.4 4,210,367 + HP15_3979 0.26 -0.3 4,210,428 - HP15_3979 0.35 -1.8 4,210,508 + HP15_3979 0.48 +0.0 4,210,671 + HP15_3979 0.72 -0.0 4,210,901 - -0.6 4,210,950 - -0.8 4,210,952 + +0.4 4,210,989 + -0.2 4,211,014 + +0.0 4,211,038 + -1.1 4,211,055 + -0.1 4,211,055 + +0.8 4,211,083 - HP15_3980 0.10 +1.6 4,211,194 + HP15_3980 0.15 -0.8 4,211,194 + HP15_3980 0.15 -0.1 4,211,367 + HP15_3980 0.24 +0.2 4,211,417 - HP15_3980 0.26 +0.5 4,211,417 - HP15_3980 0.26 +0.9 4,211,475 - HP15_3980 0.29 -0.1 4,211,577 - HP15_3980 0.33 +0.3 4,211,632 - HP15_3980 0.36 -0.2 4,211,712 + HP15_3980 0.40 +0.5 4,211,767 + HP15_3980 0.42 -0.8 4,211,767 + HP15_3980 0.42 +0.4 4,211,767 + HP15_3980 0.42 -0.2 4,211,776 - HP15_3980 0.43 +0.6 4,211,841 + HP15_3980 0.46 -0.2
Or see this region's nucleotide sequence