Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02260 and PGA1_262p02270 are separated by 20 nucleotides PGA1_262p02270 and PGA1_262p02280 are separated by 175 nucleotides
PGA1_262p02260: PGA1_262p02260 - putative two-component sensor histidine kinase/response regulator hybrid protein, at 243,128 to 245,407
_262p02260
PGA1_262p02270: PGA1_262p02270 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 245,428 to 246,360
_262p02270
PGA1_262p02280: PGA1_262p02280 - Phosphoenolpyruvate synthase/pyruvate phosphate dikinase, at 246,536 to 250,561
_262p02280
Position (kb) 245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 244.546 kb on - strand, within PGA1_262p02260 at 244.734 kb on - strand, within PGA1_262p02260 at 244.821 kb on - strand, within PGA1_262p02260 at 244.921 kb on - strand, within PGA1_262p02260 at 244.933 kb on - strand, within PGA1_262p02260 at 244.948 kb on + strand, within PGA1_262p02260 at 244.980 kb on + strand, within PGA1_262p02260 at 245.091 kb on + strand, within PGA1_262p02260 at 245.149 kb on - strand, within PGA1_262p02260 at 245.172 kb on - strand, within PGA1_262p02260 at 245.387 kb on + strand at 245.412 kb on - strand at 245.419 kb on - strand at 245.419 kb on - strand at 245.448 kb on - strand at 245.485 kb on + strand at 245.591 kb on - strand, within PGA1_262p02270 at 245.730 kb on + strand, within PGA1_262p02270 at 245.730 kb on + strand, within PGA1_262p02270 at 245.748 kb on + strand, within PGA1_262p02270 at 245.763 kb on + strand, within PGA1_262p02270 at 245.766 kb on - strand, within PGA1_262p02270 at 245.771 kb on - strand, within PGA1_262p02270 at 245.771 kb on - strand, within PGA1_262p02270 at 245.827 kb on - strand, within PGA1_262p02270 at 245.856 kb on - strand, within PGA1_262p02270 at 245.895 kb on - strand, within PGA1_262p02270 at 245.908 kb on - strand, within PGA1_262p02270 at 245.917 kb on - strand, within PGA1_262p02270 at 245.982 kb on - strand, within PGA1_262p02270 at 245.985 kb on + strand, within PGA1_262p02270 at 245.996 kb on + strand, within PGA1_262p02270 at 245.996 kb on + strand, within PGA1_262p02270 at 246.004 kb on - strand, within PGA1_262p02270 at 246.004 kb on - strand, within PGA1_262p02270 at 246.004 kb on - strand, within PGA1_262p02270 at 246.092 kb on + strand, within PGA1_262p02270 at 246.132 kb on - strand, within PGA1_262p02270 at 246.168 kb on - strand, within PGA1_262p02270 at 246.168 kb on - strand, within PGA1_262p02270 at 246.168 kb on - strand, within PGA1_262p02270 at 246.201 kb on - strand, within PGA1_262p02270 at 246.231 kb on + strand, within PGA1_262p02270 at 246.262 kb on + strand, within PGA1_262p02270 at 246.265 kb on + strand, within PGA1_262p02270 at 246.273 kb on - strand at 246.273 kb on - strand at 246.278 kb on + strand at 246.321 kb on + strand at 246.321 kb on + strand at 246.327 kb on + strand at 246.332 kb on + strand at 246.339 kb on - strand at 246.340 kb on - strand at 246.367 kb on + strand at 246.367 kb on + strand at 246.367 kb on + strand at 246.375 kb on - strand at 246.375 kb on - strand at 246.375 kb on - strand at 246.375 kb on - strand at 246.375 kb on - strand at 246.375 kb on - strand at 246.375 kb on - strand at 246.399 kb on + strand at 246.567 kb on - strand at 246.578 kb on - strand at 246.598 kb on - strand at 246.636 kb on - strand at 246.647 kb on - strand at 246.680 kb on - strand at 246.768 kb on - strand at 246.775 kb on - strand at 246.802 kb on + strand at 246.869 kb on - strand at 246.869 kb on - strand at 246.886 kb on - strand at 246.922 kb on + strand at 246.922 kb on + strand at 246.930 kb on - strand at 246.985 kb on + strand, within PGA1_262p02280 at 247.019 kb on + strand, within PGA1_262p02280 at 247.290 kb on + strand, within PGA1_262p02280 at 247.318 kb on + strand, within PGA1_262p02280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 244,546 - PGA1_262p02260 0.62 -0.3 244,734 - PGA1_262p02260 0.70 -1.2 244,821 - PGA1_262p02260 0.74 +1.3 244,921 - PGA1_262p02260 0.79 +0.0 244,933 - PGA1_262p02260 0.79 +0.6 244,948 + PGA1_262p02260 0.80 -1.3 244,980 + PGA1_262p02260 0.81 +0.7 245,091 + PGA1_262p02260 0.86 +0.1 245,149 - PGA1_262p02260 0.89 -1.8 245,172 - PGA1_262p02260 0.90 -0.4 245,387 + -0.8 245,412 - -1.2 245,419 - +0.2 245,419 - -1.4 245,448 - -2.4 245,485 + -1.5 245,591 - PGA1_262p02270 0.17 -3.5 245,730 + PGA1_262p02270 0.32 -0.9 245,730 + PGA1_262p02270 0.32 -1.6 245,748 + PGA1_262p02270 0.34 -0.1 245,763 + PGA1_262p02270 0.36 -0.4 245,766 - PGA1_262p02270 0.36 -2.1 245,771 - PGA1_262p02270 0.37 +0.4 245,771 - PGA1_262p02270 0.37 -0.1 245,827 - PGA1_262p02270 0.43 -2.8 245,856 - PGA1_262p02270 0.46 -0.1 245,895 - PGA1_262p02270 0.50 -1.0 245,908 - PGA1_262p02270 0.51 -1.4 245,917 - PGA1_262p02270 0.52 -1.3 245,982 - PGA1_262p02270 0.59 -0.8 245,985 + PGA1_262p02270 0.60 -0.3 245,996 + PGA1_262p02270 0.61 +0.4 245,996 + PGA1_262p02270 0.61 -0.2 246,004 - PGA1_262p02270 0.62 -1.6 246,004 - PGA1_262p02270 0.62 -0.2 246,004 - PGA1_262p02270 0.62 -0.7 246,092 + PGA1_262p02270 0.71 -0.7 246,132 - PGA1_262p02270 0.75 -1.4 246,168 - PGA1_262p02270 0.79 -0.8 246,168 - PGA1_262p02270 0.79 -1.4 246,168 - PGA1_262p02270 0.79 -0.9 246,201 - PGA1_262p02270 0.83 -0.6 246,231 + PGA1_262p02270 0.86 -0.8 246,262 + PGA1_262p02270 0.89 -2.0 246,265 + PGA1_262p02270 0.90 -2.1 246,273 - -0.1 246,273 - +0.3 246,278 + -1.0 246,321 + -0.3 246,321 + -0.5 246,327 + -0.9 246,332 + -0.0 246,339 - -0.4 246,340 - -2.0 246,367 + -2.3 246,367 + +0.9 246,367 + -0.2 246,375 - +0.1 246,375 - -0.0 246,375 - -0.2 246,375 - -0.6 246,375 - -0.2 246,375 - -0.3 246,375 - +0.1 246,399 + -1.5 246,567 - -0.6 246,578 - -0.3 246,598 - +1.0 246,636 - +0.7 246,647 - +0.5 246,680 - +0.1 246,768 - +0.8 246,775 - -0.4 246,802 + +0.1 246,869 - -0.1 246,869 - -0.8 246,886 - -1.2 246,922 + -0.3 246,922 + -0.4 246,930 - +0.7 246,985 + PGA1_262p02280 0.11 -1.0 247,019 + PGA1_262p02280 0.12 +0.9 247,290 + PGA1_262p02280 0.19 -0.3 247,318 + PGA1_262p02280 0.19 +0.5
Or see this region's nucleotide sequence