Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_346 and HP15_347 are separated by 439 nucleotides HP15_347 and HP15_348 are separated by 15 nucleotides HP15_348 and HP15_349 overlap by 4 nucleotides
HP15_346: HP15_346 - triacylglycerol lipase, at 340,803 to 341,606
_346
HP15_347: HP15_347 - glutamate-1-semialdehyde 2,1-aminomutase, at 342,046 to 343,326
_347
HP15_348: HP15_348 - thiamine-phosphate pyrophosphorylase, at 343,342 to 344,001
_348
HP15_349: HP15_349 - phosphomethylpyrimidine kinase, at 343,998 to 344,651
_349
Position (kb) 342
343
344 Strain fitness (log2 ratio) -1
0
1 at 341.118 kb on + strand, within HP15_346 at 341.160 kb on + strand, within HP15_346 at 341.160 kb on + strand, within HP15_346 at 341.163 kb on - strand, within HP15_346 at 341.168 kb on - strand, within HP15_346 at 341.175 kb on - strand, within HP15_346 at 341.195 kb on + strand, within HP15_346 at 341.201 kb on + strand, within HP15_346 at 341.336 kb on + strand, within HP15_346 at 341.426 kb on + strand, within HP15_346 at 341.440 kb on + strand, within HP15_346 at 341.506 kb on - strand, within HP15_346 at 341.542 kb on - strand at 341.639 kb on + strand at 341.647 kb on - strand at 341.677 kb on - strand at 341.679 kb on + strand at 341.687 kb on - strand at 341.818 kb on - strand at 341.818 kb on - strand at 341.920 kb on + strand at 341.958 kb on - strand at 341.985 kb on + strand at 342.020 kb on - strand at 342.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 341,118 + HP15_346 0.39 +0.1 341,160 + HP15_346 0.44 -0.2 341,160 + HP15_346 0.44 +0.0 341,163 - HP15_346 0.45 -0.4 341,168 - HP15_346 0.45 -0.1 341,175 - HP15_346 0.46 -0.5 341,195 + HP15_346 0.49 +0.8 341,201 + HP15_346 0.50 +0.2 341,336 + HP15_346 0.66 +1.0 341,426 + HP15_346 0.77 +1.1 341,440 + HP15_346 0.79 +0.4 341,506 - HP15_346 0.87 +0.3 341,542 - +0.6 341,639 + -0.1 341,647 - -0.1 341,677 - +0.1 341,679 + +0.6 341,687 - -0.1 341,818 - +0.4 341,818 - -0.3 341,920 + +1.7 341,958 - +0.1 341,985 + -1.5 342,020 - +0.4 342,035 - +0.2
Or see this region's nucleotide sequence