Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3323 and HP15_3324 are separated by 64 nucleotides HP15_3324 and HP15_3325 are separated by 65 nucleotides HP15_3325 and HP15_3326 are separated by 143 nucleotides HP15_3326 and HP15_3327 are separated by 176 nucleotides
HP15_3323: HP15_3323 - ribosomal protein L33, at 3,484,414 to 3,484,569
_3323
HP15_3324: HP15_3324 - endonuclease/exonuclease/phosphatase, at 3,484,634 to 3,485,494
_3324
HP15_3325: HP15_3325 - DSBA oxidoreductase, at 3,485,560 to 3,486,195
_3325
HP15_3326: HP15_3326 - cytochrome c, class I, at 3,486,339 to 3,486,947
_3326
HP15_3327: HP15_3327 - GTP-binding protein EngB, at 3,487,124 to 3,487,771
_3327
Position (kb)
3485
3486
3487 Strain fitness (log2 ratio)
-1
0
1
2 at 3484.640 kb on - strand at 3484.685 kb on - strand at 3484.731 kb on - strand, within HP15_3324 at 3484.800 kb on + strand, within HP15_3324 at 3484.920 kb on - strand, within HP15_3324 at 3485.070 kb on - strand, within HP15_3324 at 3485.206 kb on - strand, within HP15_3324 at 3485.389 kb on - strand, within HP15_3324 at 3485.461 kb on - strand at 3485.525 kb on + strand at 3485.535 kb on + strand at 3485.565 kb on - strand at 3485.777 kb on + strand, within HP15_3325 at 3485.777 kb on + strand, within HP15_3325 at 3485.785 kb on - strand, within HP15_3325 at 3485.787 kb on - strand, within HP15_3325 at 3485.818 kb on + strand, within HP15_3325 at 3485.898 kb on + strand, within HP15_3325 at 3486.058 kb on - strand, within HP15_3325 at 3486.100 kb on + strand, within HP15_3325 at 3486.136 kb on - strand at 3486.281 kb on + strand at 3486.992 kb on - strand at 3487.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 3,484,640 - +0.5 3,484,685 - +0.4 3,484,731 - HP15_3324 0.11 +2.0 3,484,800 + HP15_3324 0.19 +2.4 3,484,920 - HP15_3324 0.33 +1.0 3,485,070 - HP15_3324 0.51 +2.0 3,485,206 - HP15_3324 0.66 +1.8 3,485,389 - HP15_3324 0.88 +0.9 3,485,461 - +1.3 3,485,525 + +0.6 3,485,535 + +0.6 3,485,565 - +0.6 3,485,777 + HP15_3325 0.34 +0.4 3,485,777 + HP15_3325 0.34 +0.3 3,485,785 - HP15_3325 0.35 -0.1 3,485,787 - HP15_3325 0.36 +0.1 3,485,818 + HP15_3325 0.41 +0.4 3,485,898 + HP15_3325 0.53 +1.1 3,486,058 - HP15_3325 0.78 -0.0 3,486,100 + HP15_3325 0.85 +1.7 3,486,136 - +1.6 3,486,281 + -0.9 3,486,992 - -0.4 3,487,081 - -0.0
Or see this region's nucleotide sequence