Strain Fitness in Marinobacter adhaerens HP15 around HP15_3009

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3007 and HP15_3008 overlap by 4 nucleotidesHP15_3008 and HP15_3009 overlap by 4 nucleotidesHP15_3009 and HP15_3010 are separated by 9 nucleotidesHP15_3010 and HP15_3011 overlap by 7 nucleotides HP15_3007: HP15_3007 - carboxyl-terminal protease family protein, at 3,152,084 to 3,153,490 _3007 HP15_3008: HP15_3008 - secreted protein containing DUF610, YibQ, at 3,153,487 to 3,154,302 _3008 HP15_3009: HP15_3009 - protein containing histidine biosynthesis, HisF domain, at 3,154,299 to 3,155,072 _3009 HP15_3010: HP15_3010 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 3,155,082 to 3,155,819 _3010 HP15_3011: HP15_3011 - imidazole glycerol phosphate synthase subunit HisH, at 3,155,813 to 3,156,490 _3011 Position (kb) 3154 3155 3156Strain fitness (log2 ratio) -1 0 1at 3153.351 kb on - strandat 3153.503 kb on - strandat 3153.505 kb on + strandat 3153.700 kb on - strand, within HP15_3008at 3153.815 kb on - strand, within HP15_3008at 3153.832 kb on + strand, within HP15_3008at 3153.881 kb on - strand, within HP15_3008at 3153.917 kb on - strand, within HP15_3008at 3153.960 kb on - strand, within HP15_3008at 3154.040 kb on + strand, within HP15_3008at 3154.149 kb on + strand, within HP15_3008at 3154.215 kb on + strand, within HP15_3008at 3154.267 kb on - strandat 3154.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
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3,153,351 - -0.8
3,153,503 - -1.7
3,153,505 + +0.1
3,153,700 - HP15_3008 0.26 +0.8
3,153,815 - HP15_3008 0.40 -0.3
3,153,832 + HP15_3008 0.42 -0.6
3,153,881 - HP15_3008 0.48 +0.7
3,153,917 - HP15_3008 0.53 -0.2
3,153,960 - HP15_3008 0.58 +0.3
3,154,040 + HP15_3008 0.68 +0.1
3,154,149 + HP15_3008 0.81 -0.1
3,154,215 + HP15_3008 0.89 +0.9
3,154,267 - +0.1
3,154,320 - -0.1

Or see this region's nucleotide sequence