Strain Fitness in Marinobacter adhaerens HP15 around HP15_2172

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2170 and HP15_2171 are separated by 51 nucleotidesHP15_2171 and HP15_2172 are separated by 251 nucleotidesHP15_2172 and HP15_2173 are separated by 21 nucleotidesHP15_2173 and HP15_2174 overlap by 4 nucleotides HP15_2170: HP15_2170 - ABC-type sugar transport system, periplasmic component, at 2,279,786 to 2,281,570 _2170 HP15_2171: HP15_2171 - uracil-DNA glycosylase superfamily, at 2,281,622 to 2,282,071 _2171 HP15_2172: HP15_2172 - nitrorecductase, at 2,282,323 to 2,283,063 _2172 HP15_2173: HP15_2173 - glucokinase, at 2,283,085 to 2,284,050 _2173 HP15_2174: HP15_2174 - 6-phosphogluconate dehydratase, at 2,284,047 to 2,285,879 _2174 Position (kb) 2282 2283 2284Strain fitness (log2 ratio) -1 0 1at 2281.366 kb on + strand, within HP15_2170at 2281.366 kb on + strand, within HP15_2170at 2281.374 kb on - strand, within HP15_2170at 2281.374 kb on - strand, within HP15_2170at 2281.379 kb on - strand, within HP15_2170at 2281.547 kb on + strandat 2281.738 kb on - strand, within HP15_2171at 2281.739 kb on - strand, within HP15_2171at 2281.755 kb on + strand, within HP15_2171at 2281.758 kb on + strand, within HP15_2171at 2281.806 kb on + strand, within HP15_2171at 2282.095 kb on - strandat 2282.226 kb on + strandat 2282.438 kb on - strand, within HP15_2172at 2282.555 kb on + strand, within HP15_2172at 2282.737 kb on + strand, within HP15_2172at 2282.745 kb on - strand, within HP15_2172at 2282.745 kb on - strand, within HP15_2172at 2282.794 kb on - strand, within HP15_2172at 2282.849 kb on - strand, within HP15_2172at 2282.923 kb on - strand, within HP15_2172at 2282.962 kb on + strand, within HP15_2172at 2283.029 kb on + strandat 2283.057 kb on + strandat 2283.108 kb on - strandat 2283.249 kb on + strand, within HP15_2173at 2283.297 kb on - strand, within HP15_2173at 2283.367 kb on + strand, within HP15_2173at 2283.422 kb on + strand, within HP15_2173at 2283.422 kb on + strand, within HP15_2173at 2283.460 kb on + strand, within HP15_2173at 2283.468 kb on - strand, within HP15_2173at 2283.575 kb on + strand, within HP15_2173at 2283.593 kb on - strand, within HP15_2173at 2283.649 kb on - strand, within HP15_2173at 2283.742 kb on + strand, within HP15_2173at 2283.922 kb on - strand, within HP15_2173at 2284.014 kb on - strandat 2284.036 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
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2,281,366 + HP15_2170 0.89 -0.2
2,281,366 + HP15_2170 0.89 -0.3
2,281,374 - HP15_2170 0.89 -0.4
2,281,374 - HP15_2170 0.89 -0.0
2,281,379 - HP15_2170 0.89 -0.1
2,281,547 + +0.0
2,281,738 - HP15_2171 0.26 -0.3
2,281,739 - HP15_2171 0.26 +0.2
2,281,755 + HP15_2171 0.30 +0.6
2,281,758 + HP15_2171 0.30 +0.5
2,281,806 + HP15_2171 0.41 -0.4
2,282,095 - +0.4
2,282,226 + -0.3
2,282,438 - HP15_2172 0.16 -0.3
2,282,555 + HP15_2172 0.31 +1.5
2,282,737 + HP15_2172 0.56 -0.5
2,282,745 - HP15_2172 0.57 +1.0
2,282,745 - HP15_2172 0.57 -0.8
2,282,794 - HP15_2172 0.64 -0.1
2,282,849 - HP15_2172 0.71 +0.9
2,282,923 - HP15_2172 0.81 -0.1
2,282,962 + HP15_2172 0.86 +0.2
2,283,029 + +0.2
2,283,057 + +0.6
2,283,108 - -0.1
2,283,249 + HP15_2173 0.17 +0.2
2,283,297 - HP15_2173 0.22 -0.1
2,283,367 + HP15_2173 0.29 -0.3
2,283,422 + HP15_2173 0.35 -0.2
2,283,422 + HP15_2173 0.35 +0.0
2,283,460 + HP15_2173 0.39 +0.1
2,283,468 - HP15_2173 0.40 -1.7
2,283,575 + HP15_2173 0.51 +0.6
2,283,593 - HP15_2173 0.53 -0.0
2,283,649 - HP15_2173 0.58 -0.4
2,283,742 + HP15_2173 0.68 -0.0
2,283,922 - HP15_2173 0.87 +0.6
2,284,014 - +0.2
2,284,036 + +0.4

Or see this region's nucleotide sequence