Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1958 and HP15_1959 overlap by 1 nucleotides HP15_1959 and HP15_1960 overlap by 11 nucleotides HP15_1960 and HP15_1961 overlap by 1 nucleotides HP15_1961 and HP15_1962 are separated by 83 nucleotides
HP15_1958: HP15_1958 - hypothetical protein, at 2,077,504 to 2,077,914
_1958
HP15_1959: HP15_1959 - conserved hypothetical protein, at 2,077,914 to 2,078,531
_1959
HP15_1960: HP15_1960 - hypothetical protein, at 2,078,521 to 2,078,835
_1960
HP15_1961: HP15_1961 - hypothetical protein, at 2,078,835 to 2,079,107
_1961
HP15_1962: HP15_1962 - capsid protein of prophage, at 2,079,191 to 2,080,210
_1962
Position (kb)
2078
2079
2080 Strain fitness (log2 ratio)
-1
0
1 at 2077.837 kb on + strand, within HP15_1958 at 2077.875 kb on - strand at 2077.896 kb on + strand at 2078.067 kb on - strand, within HP15_1959 at 2078.127 kb on - strand, within HP15_1959 at 2078.127 kb on - strand, within HP15_1959 at 2078.154 kb on + strand, within HP15_1959 at 2078.285 kb on + strand, within HP15_1959 at 2078.340 kb on - strand, within HP15_1959 at 2078.355 kb on + strand, within HP15_1959 at 2078.360 kb on - strand, within HP15_1959 at 2078.363 kb on - strand, within HP15_1959 at 2078.378 kb on - strand, within HP15_1959 at 2078.410 kb on + strand, within HP15_1959 at 2078.543 kb on + strand at 2078.638 kb on + strand, within HP15_1960 at 2078.680 kb on - strand, within HP15_1960 at 2078.698 kb on + strand, within HP15_1960 at 2078.708 kb on + strand, within HP15_1960 at 2078.713 kb on + strand, within HP15_1960 at 2078.756 kb on - strand, within HP15_1960 at 2078.806 kb on + strand at 2078.892 kb on + strand, within HP15_1961 at 2078.900 kb on - strand, within HP15_1961 at 2078.915 kb on + strand, within HP15_1961 at 2079.040 kb on + strand, within HP15_1961 at 2079.220 kb on + strand at 2079.228 kb on - strand at 2079.324 kb on + strand, within HP15_1962 at 2079.456 kb on + strand, within HP15_1962 at 2079.466 kb on + strand, within HP15_1962 at 2079.509 kb on - strand, within HP15_1962 at 2079.544 kb on + strand, within HP15_1962 at 2079.652 kb on + strand, within HP15_1962 at 2079.660 kb on - strand, within HP15_1962 at 2079.744 kb on - strand, within HP15_1962 at 2079.813 kb on + strand, within HP15_1962 at 2079.891 kb on + strand, within HP15_1962 at 2080.050 kb on - strand, within HP15_1962
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 2,077,837 + HP15_1958 0.81 +0.6 2,077,875 - -1.1 2,077,896 + +0.3 2,078,067 - HP15_1959 0.25 +1.0 2,078,127 - HP15_1959 0.34 +0.4 2,078,127 - HP15_1959 0.34 -0.9 2,078,154 + HP15_1959 0.39 -0.2 2,078,285 + HP15_1959 0.60 +0.3 2,078,340 - HP15_1959 0.69 -0.3 2,078,355 + HP15_1959 0.71 -0.1 2,078,360 - HP15_1959 0.72 -0.1 2,078,363 - HP15_1959 0.73 -0.1 2,078,378 - HP15_1959 0.75 -0.4 2,078,410 + HP15_1959 0.80 -0.5 2,078,543 + -1.3 2,078,638 + HP15_1960 0.37 -0.1 2,078,680 - HP15_1960 0.50 -0.8 2,078,698 + HP15_1960 0.56 -0.1 2,078,708 + HP15_1960 0.59 -0.4 2,078,713 + HP15_1960 0.61 +0.4 2,078,756 - HP15_1960 0.75 +0.4 2,078,806 + -0.1 2,078,892 + HP15_1961 0.21 -0.3 2,078,900 - HP15_1961 0.24 +1.0 2,078,915 + HP15_1961 0.29 +0.4 2,079,040 + HP15_1961 0.75 +1.4 2,079,220 + +1.7 2,079,228 - +0.5 2,079,324 + HP15_1962 0.13 +0.8 2,079,456 + HP15_1962 0.26 +0.0 2,079,466 + HP15_1962 0.27 +0.2 2,079,509 - HP15_1962 0.31 -0.3 2,079,544 + HP15_1962 0.35 +0.4 2,079,652 + HP15_1962 0.45 +1.1 2,079,660 - HP15_1962 0.46 -0.2 2,079,744 - HP15_1962 0.54 +1.1 2,079,813 + HP15_1962 0.61 -0.5 2,079,891 + HP15_1962 0.69 -0.0 2,080,050 - HP15_1962 0.84 -0.1
Or see this region's nucleotide sequence