Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1803 and HP15_1804 are separated by 28 nucleotides HP15_1804 and HP15_1805 are separated by 96 nucleotides HP15_1805 and HP15_1806 are separated by 168 nucleotides
HP15_1803: HP15_1803 - ribonuclease Hi chain A-like protein, at 1,895,739 to 1,896,182
_1803
HP15_1804: HP15_1804 - generic methyl-transferase, at 1,896,211 to 1,897,005
_1804
HP15_1805: HP15_1805 - hydroxyacylglutathione hydrolase, at 1,897,102 to 1,897,896
_1805
HP15_1806: HP15_1806 - membrane-bound lytic murein transglycosylase D precursor, at 1,898,065 to 1,899,765
_1806
Position (kb)
1897
1898 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1896.275 kb on + strand at 1896.480 kb on + strand, within HP15_1804 at 1896.547 kb on - strand, within HP15_1804 at 1896.581 kb on + strand, within HP15_1804 at 1896.589 kb on + strand, within HP15_1804 at 1896.612 kb on + strand, within HP15_1804 at 1896.666 kb on - strand, within HP15_1804 at 1896.674 kb on + strand, within HP15_1804 at 1896.738 kb on - strand, within HP15_1804 at 1896.794 kb on + strand, within HP15_1804 at 1896.794 kb on + strand, within HP15_1804 at 1896.939 kb on - strand at 1896.939 kb on - strand at 1896.939 kb on - strand at 1896.949 kb on - strand at 1896.961 kb on + strand at 1896.961 kb on + strand at 1897.018 kb on + strand at 1897.045 kb on - strand at 1897.046 kb on - strand at 1897.097 kb on + strand at 1897.097 kb on + strand at 1897.097 kb on + strand at 1897.097 kb on + strand at 1897.097 kb on + strand at 1897.105 kb on - strand at 1897.105 kb on - strand at 1897.105 kb on - strand at 1897.210 kb on + strand, within HP15_1805 at 1897.218 kb on - strand, within HP15_1805 at 1897.278 kb on - strand, within HP15_1805 at 1897.335 kb on - strand, within HP15_1805 at 1897.412 kb on + strand, within HP15_1805 at 1897.481 kb on - strand, within HP15_1805 at 1897.534 kb on + strand, within HP15_1805 at 1897.570 kb on + strand, within HP15_1805 at 1897.570 kb on + strand, within HP15_1805 at 1897.578 kb on - strand, within HP15_1805 at 1897.615 kb on + strand, within HP15_1805 at 1897.925 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 1,896,275 + +0.7 1,896,480 + HP15_1804 0.34 -0.2 1,896,547 - HP15_1804 0.42 +0.9 1,896,581 + HP15_1804 0.47 +0.3 1,896,589 + HP15_1804 0.48 +1.1 1,896,612 + HP15_1804 0.50 -0.8 1,896,666 - HP15_1804 0.57 -0.6 1,896,674 + HP15_1804 0.58 -0.1 1,896,738 - HP15_1804 0.66 +0.7 1,896,794 + HP15_1804 0.73 -0.0 1,896,794 + HP15_1804 0.73 +1.1 1,896,939 - +0.0 1,896,939 - +0.7 1,896,939 - +0.8 1,896,949 - -0.3 1,896,961 + -0.1 1,896,961 + -0.1 1,897,018 + +1.0 1,897,045 - +0.5 1,897,046 - -0.8 1,897,097 + +0.7 1,897,097 + -0.2 1,897,097 + +0.5 1,897,097 + +1.3 1,897,097 + +0.4 1,897,105 - +2.7 1,897,105 - +2.9 1,897,105 - +2.7 1,897,210 + HP15_1805 0.14 +3.1 1,897,218 - HP15_1805 0.15 +3.2 1,897,278 - HP15_1805 0.22 +3.5 1,897,335 - HP15_1805 0.29 +3.5 1,897,412 + HP15_1805 0.39 +3.3 1,897,481 - HP15_1805 0.48 +3.0 1,897,534 + HP15_1805 0.54 +3.6 1,897,570 + HP15_1805 0.59 +3.4 1,897,570 + HP15_1805 0.59 +2.8 1,897,578 - HP15_1805 0.60 +3.9 1,897,615 + HP15_1805 0.65 +3.0 1,897,925 + +0.2
Or see this region's nucleotide sequence