Strain Fitness in Marinobacter adhaerens HP15 around HP15_1805

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1803 and HP15_1804 are separated by 28 nucleotidesHP15_1804 and HP15_1805 are separated by 96 nucleotidesHP15_1805 and HP15_1806 are separated by 168 nucleotides HP15_1803: HP15_1803 - ribonuclease Hi chain A-like protein, at 1,895,739 to 1,896,182 _1803 HP15_1804: HP15_1804 - generic methyl-transferase, at 1,896,211 to 1,897,005 _1804 HP15_1805: HP15_1805 - hydroxyacylglutathione hydrolase, at 1,897,102 to 1,897,896 _1805 HP15_1806: HP15_1806 - membrane-bound lytic murein transglycosylase D precursor, at 1,898,065 to 1,899,765 _1806 Position (kb) 1897 1898Strain fitness (log2 ratio) -1 0 1 2 3 4at 1896.275 kb on + strandat 1896.480 kb on + strand, within HP15_1804at 1896.547 kb on - strand, within HP15_1804at 1896.581 kb on + strand, within HP15_1804at 1896.589 kb on + strand, within HP15_1804at 1896.612 kb on + strand, within HP15_1804at 1896.666 kb on - strand, within HP15_1804at 1896.674 kb on + strand, within HP15_1804at 1896.738 kb on - strand, within HP15_1804at 1896.794 kb on + strand, within HP15_1804at 1896.794 kb on + strand, within HP15_1804at 1896.939 kb on - strandat 1896.939 kb on - strandat 1896.939 kb on - strandat 1896.949 kb on - strandat 1896.961 kb on + strandat 1896.961 kb on + strandat 1897.018 kb on + strandat 1897.045 kb on - strandat 1897.046 kb on - strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.105 kb on - strandat 1897.105 kb on - strandat 1897.105 kb on - strandat 1897.210 kb on + strand, within HP15_1805at 1897.218 kb on - strand, within HP15_1805at 1897.278 kb on - strand, within HP15_1805at 1897.335 kb on - strand, within HP15_1805at 1897.412 kb on + strand, within HP15_1805at 1897.481 kb on - strand, within HP15_1805at 1897.534 kb on + strand, within HP15_1805at 1897.570 kb on + strand, within HP15_1805at 1897.570 kb on + strand, within HP15_1805at 1897.578 kb on - strand, within HP15_1805at 1897.615 kb on + strand, within HP15_1805at 1897.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
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1,896,275 + +0.7
1,896,480 + HP15_1804 0.34 -0.2
1,896,547 - HP15_1804 0.42 +0.9
1,896,581 + HP15_1804 0.47 +0.3
1,896,589 + HP15_1804 0.48 +1.1
1,896,612 + HP15_1804 0.50 -0.8
1,896,666 - HP15_1804 0.57 -0.6
1,896,674 + HP15_1804 0.58 -0.1
1,896,738 - HP15_1804 0.66 +0.7
1,896,794 + HP15_1804 0.73 -0.0
1,896,794 + HP15_1804 0.73 +1.1
1,896,939 - +0.0
1,896,939 - +0.7
1,896,939 - +0.8
1,896,949 - -0.3
1,896,961 + -0.1
1,896,961 + -0.1
1,897,018 + +1.0
1,897,045 - +0.5
1,897,046 - -0.8
1,897,097 + +0.7
1,897,097 + -0.2
1,897,097 + +0.5
1,897,097 + +1.3
1,897,097 + +0.4
1,897,105 - +2.7
1,897,105 - +2.9
1,897,105 - +2.7
1,897,210 + HP15_1805 0.14 +3.1
1,897,218 - HP15_1805 0.15 +3.2
1,897,278 - HP15_1805 0.22 +3.5
1,897,335 - HP15_1805 0.29 +3.5
1,897,412 + HP15_1805 0.39 +3.3
1,897,481 - HP15_1805 0.48 +3.0
1,897,534 + HP15_1805 0.54 +3.6
1,897,570 + HP15_1805 0.59 +3.4
1,897,570 + HP15_1805 0.59 +2.8
1,897,578 - HP15_1805 0.60 +3.9
1,897,615 + HP15_1805 0.65 +3.0
1,897,925 + +0.2

Or see this region's nucleotide sequence