Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1735 and HP15_1736 are separated by 58 nucleotides HP15_1736 and HP15_1737 are separated by 25 nucleotides HP15_1737 and HP15_1738 are separated by 170 nucleotides HP15_1738 and HP15_1739 are separated by 38 nucleotides
HP15_1735: HP15_1735 - ABC transporter, permease protein, at 1,833,984 to 1,834,745
_1735
HP15_1736: HP15_1736 - protein containing DUF192, at 1,834,804 to 1,835,259
_1736
HP15_1737: HP15_1737 - enoyl-CoA hydratase/isomerase, at 1,835,285 to 1,836,106
_1737
HP15_1738: HP15_1738 - hypothetical protein, at 1,836,277 to 1,836,408
_1738
HP15_1739: HP15_1739 - membrane protein containing DUF6, transmembrane, at 1,836,447 to 1,837,325
_1739
Position (kb) 1835
1836
1837 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1834.290 kb on + strand, within HP15_1735 at 1834.295 kb on + strand, within HP15_1735 at 1834.390 kb on - strand, within HP15_1735 at 1834.747 kb on - strand at 1834.812 kb on + strand at 1834.919 kb on + strand, within HP15_1736 at 1834.919 kb on + strand, within HP15_1736 at 1835.374 kb on + strand, within HP15_1737 at 1835.382 kb on - strand, within HP15_1737 at 1835.382 kb on - strand, within HP15_1737 at 1835.535 kb on + strand, within HP15_1737 at 1835.536 kb on + strand, within HP15_1737 at 1835.562 kb on + strand, within HP15_1737 at 1835.635 kb on + strand, within HP15_1737 at 1835.640 kb on + strand, within HP15_1737 at 1835.640 kb on + strand, within HP15_1737 at 1835.643 kb on - strand, within HP15_1737 at 1835.648 kb on - strand, within HP15_1737 at 1835.648 kb on - strand, within HP15_1737 at 1835.648 kb on - strand, within HP15_1737 at 1835.704 kb on + strand, within HP15_1737 at 1835.877 kb on - strand, within HP15_1737 at 1835.953 kb on + strand, within HP15_1737 at 1836.055 kb on + strand at 1836.140 kb on - strand at 1836.145 kb on + strand at 1836.399 kb on - strand at 1836.419 kb on + strand at 1836.422 kb on - strand at 1836.478 kb on + strand at 1836.606 kb on + strand, within HP15_1739 at 1836.657 kb on + strand, within HP15_1739 at 1836.665 kb on - strand, within HP15_1739 at 1836.665 kb on - strand, within HP15_1739 at 1836.677 kb on - strand, within HP15_1739 at 1836.818 kb on - strand, within HP15_1739 at 1836.836 kb on - strand, within HP15_1739 at 1836.896 kb on - strand, within HP15_1739 at 1836.938 kb on + strand, within HP15_1739 at 1836.981 kb on + strand, within HP15_1739 at 1837.025 kb on + strand, within HP15_1739 at 1837.033 kb on - strand, within HP15_1739 at 1837.033 kb on - strand, within HP15_1739 at 1837.033 kb on - strand, within HP15_1739 at 1837.033 kb on - strand, within HP15_1739 at 1837.084 kb on - strand, within HP15_1739 at 1837.084 kb on - strand, within HP15_1739
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 1,834,290 + HP15_1735 0.40 +0.1 1,834,295 + HP15_1735 0.41 -0.6 1,834,390 - HP15_1735 0.53 +0.1 1,834,747 - -0.1 1,834,812 + -0.8 1,834,919 + HP15_1736 0.25 -0.1 1,834,919 + HP15_1736 0.25 -2.8 1,835,374 + HP15_1737 0.11 -0.2 1,835,382 - HP15_1737 0.12 -0.9 1,835,382 - HP15_1737 0.12 +0.2 1,835,535 + HP15_1737 0.30 -0.0 1,835,536 + HP15_1737 0.31 -1.0 1,835,562 + HP15_1737 0.34 -0.3 1,835,635 + HP15_1737 0.43 +0.1 1,835,640 + HP15_1737 0.43 -0.8 1,835,640 + HP15_1737 0.43 +0.4 1,835,643 - HP15_1737 0.44 -0.3 1,835,648 - HP15_1737 0.44 -0.4 1,835,648 - HP15_1737 0.44 +1.0 1,835,648 - HP15_1737 0.44 -0.3 1,835,704 + HP15_1737 0.51 -0.2 1,835,877 - HP15_1737 0.72 -0.1 1,835,953 + HP15_1737 0.81 +0.4 1,836,055 + -0.6 1,836,140 - -1.4 1,836,145 + -0.2 1,836,399 - -0.4 1,836,419 + +1.7 1,836,422 - -0.1 1,836,478 + +1.5 1,836,606 + HP15_1739 0.18 -0.3 1,836,657 + HP15_1739 0.24 -0.1 1,836,665 - HP15_1739 0.25 -0.5 1,836,665 - HP15_1739 0.25 +0.9 1,836,677 - HP15_1739 0.26 +0.6 1,836,818 - HP15_1739 0.42 -0.1 1,836,836 - HP15_1739 0.44 +0.5 1,836,896 - HP15_1739 0.51 +0.9 1,836,938 + HP15_1739 0.56 +0.2 1,836,981 + HP15_1739 0.61 +0.2 1,837,025 + HP15_1739 0.66 +1.3 1,837,033 - HP15_1739 0.67 +0.9 1,837,033 - HP15_1739 0.67 -0.1 1,837,033 - HP15_1739 0.67 +0.1 1,837,033 - HP15_1739 0.67 -0.9 1,837,084 - HP15_1739 0.72 +1.1 1,837,084 - HP15_1739 0.72 -0.4
Or see this region's nucleotide sequence