Strain Fitness in Marinobacter adhaerens HP15 around HP15_1619
Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Polymyxin B sulfate 0.0004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,714,720 | - | +0.7 | |||
1,714,749 | - | -1.6 | |||
1,714,765 | - | -1.6 | |||
1,714,882 | + | HP15_1618 | 0.25 | -1.9 | |
1,714,980 | + | HP15_1618 | 0.38 | -0.5 | |
1,715,325 | + | HP15_1618 | 0.83 | -1.4 | |
1,715,358 | - | HP15_1618 | 0.88 | -0.7 | |
1,715,416 | - | +0.1 | |||
1,715,518 | + | -0.8 | |||
1,715,535 | + | -1.0 | |||
1,715,600 | - | -1.6 | |||
1,715,663 | + | HP15_1617 | 0.55 | -2.0 | |
1,715,671 | - | HP15_1617 | 0.61 | -0.8 | |
1,715,700 | - | +0.4 | |||
1,715,927 | + | HP15_1619 | 0.34 | -0.8 | |
1,715,969 | + | HP15_1619 | 0.41 | -2.4 | |
1,716,133 | - | HP15_1619 | 0.65 | -0.2 | |
1,716,246 | - | HP15_1619 | 0.81 | -0.8 | |
1,716,291 | + | HP15_1619 | 0.88 | -0.4 | |
1,716,488 | + | -0.4 | |||
1,716,504 | - | +0.7 | |||
1,716,553 | + | +0.3 | |||
1,716,561 | - | +0.0 | |||
1,716,597 | + | +1.4 | |||
1,716,605 | - | +0.1 | |||
1,716,621 | + | HP15_1620 | 0.11 | -0.1 | |
1,716,716 | - | HP15_1620 | 0.17 | +0.2 | |
1,716,772 | - | HP15_1620 | 0.20 | +0.4 | |
1,716,772 | - | HP15_1620 | 0.20 | -0.6 | |
1,716,777 | - | HP15_1620 | 0.21 | -1.2 | |
1,716,858 | - | HP15_1620 | 0.26 | +0.3 | |
1,716,991 | - | HP15_1620 | 0.34 | +0.1 | |
1,717,305 | + | HP15_1620 | 0.54 | -1.7 | |
1,717,305 | + | HP15_1620 | 0.54 | -0.9 | |
1,717,311 | + | HP15_1620 | 0.55 | +0.1 |
Or see this region's nucleotide sequence