Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1616 and HP15_1618 are separated by 14 nucleotides HP15_1618 and HP15_1617 are separated by 138 nucleotides HP15_1617 and HP15_1619 overlap by 28 nucleotides HP15_1619 and HP15_1620 are separated by 81 nucleotides
HP15_1616: HP15_1616 - protein containing DnaJ domain, at 1,714,037 to 1,714,681
_1616
HP15_1618: HP15_1618 - uncharacterized conserved protein UCP026166, sodium bile acid symporter, at 1,714,696 to 1,715,451
_1618
HP15_1617: HP15_1617 - hypothetical protein, at 1,715,590 to 1,715,721
_1617
HP15_1619: HP15_1619 - GntR domain protein, at 1,715,694 to 1,716,371
_1619
HP15_1620: HP15_1620 - flavin-containing monooxygenase FMO, at 1,716,453 to 1,718,018
_1620
Position (kb)
1715
1716 Strain fitness (log2 ratio)
-2
-1
0
1 at 1714.663 kb on - strand at 1714.677 kb on + strand at 1714.720 kb on - strand at 1714.749 kb on - strand at 1714.765 kb on - strand at 1714.882 kb on + strand, within HP15_1618 at 1714.980 kb on + strand, within HP15_1618 at 1715.325 kb on + strand, within HP15_1618 at 1715.358 kb on - strand, within HP15_1618 at 1715.416 kb on - strand at 1715.518 kb on + strand at 1715.535 kb on + strand at 1715.600 kb on - strand at 1715.663 kb on + strand, within HP15_1617 at 1715.671 kb on - strand, within HP15_1617 at 1715.700 kb on - strand at 1715.927 kb on + strand, within HP15_1619 at 1715.969 kb on + strand, within HP15_1619 at 1716.133 kb on - strand, within HP15_1619 at 1716.246 kb on - strand, within HP15_1619 at 1716.291 kb on + strand, within HP15_1619 at 1716.488 kb on + strand at 1716.504 kb on - strand at 1716.553 kb on + strand at 1716.561 kb on - strand at 1716.597 kb on + strand at 1716.605 kb on - strand at 1716.621 kb on + strand, within HP15_1620 at 1716.716 kb on - strand, within HP15_1620
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 1,714,663 - +0.0 1,714,677 + +0.5 1,714,720 - +0.7 1,714,749 - -1.6 1,714,765 - -1.6 1,714,882 + HP15_1618 0.25 -1.9 1,714,980 + HP15_1618 0.38 -0.5 1,715,325 + HP15_1618 0.83 -1.4 1,715,358 - HP15_1618 0.88 -0.7 1,715,416 - +0.1 1,715,518 + -0.8 1,715,535 + -1.0 1,715,600 - -1.6 1,715,663 + HP15_1617 0.55 -2.0 1,715,671 - HP15_1617 0.61 -0.8 1,715,700 - +0.4 1,715,927 + HP15_1619 0.34 -0.8 1,715,969 + HP15_1619 0.41 -2.4 1,716,133 - HP15_1619 0.65 -0.2 1,716,246 - HP15_1619 0.81 -0.8 1,716,291 + HP15_1619 0.88 -0.4 1,716,488 + -0.4 1,716,504 - +0.7 1,716,553 + +0.3 1,716,561 - +0.0 1,716,597 + +1.4 1,716,605 - +0.1 1,716,621 + HP15_1620 0.11 -0.1 1,716,716 - HP15_1620 0.17 +0.2
Or see this region's nucleotide sequence