Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1573 and HP15_1574 are separated by 10 nucleotides HP15_1574 and HP15_1575 are separated by 136 nucleotides
HP15_1573: HP15_1573 - formate dehydrogenase, beta subunit, at 1,654,200 to 1,655,915
_1573
HP15_1574: HP15_1574 - formate dehydrogenase, alpha subunit, at 1,655,926 to 1,658,817
_1574
HP15_1575: HP15_1575 - metallophosphoesterase, at 1,658,954 to 1,660,075
_1575
Position (kb)
1655
1656
1657
1658
1659 Strain fitness (log2 ratio)
-2
-1
0
1 at 1654.947 kb on + strand, within HP15_1573 at 1654.987 kb on - strand, within HP15_1573 at 1654.998 kb on - strand, within HP15_1573 at 1655.055 kb on + strand, within HP15_1573 at 1655.292 kb on - strand, within HP15_1573 at 1655.455 kb on + strand, within HP15_1573 at 1655.455 kb on + strand, within HP15_1573 at 1655.455 kb on + strand, within HP15_1573 at 1655.463 kb on - strand, within HP15_1573 at 1655.463 kb on - strand, within HP15_1573 at 1655.492 kb on + strand, within HP15_1573 at 1655.499 kb on + strand, within HP15_1573 at 1655.603 kb on - strand, within HP15_1573 at 1655.634 kb on - strand, within HP15_1573 at 1655.708 kb on + strand, within HP15_1573 at 1655.716 kb on - strand, within HP15_1573 at 1655.880 kb on + strand at 1655.898 kb on - strand at 1655.918 kb on - strand at 1656.011 kb on + strand at 1656.364 kb on - strand, within HP15_1574 at 1656.484 kb on - strand, within HP15_1574 at 1656.500 kb on + strand, within HP15_1574 at 1656.538 kb on - strand, within HP15_1574 at 1656.538 kb on - strand, within HP15_1574 at 1656.587 kb on - strand, within HP15_1574 at 1656.673 kb on - strand, within HP15_1574 at 1656.725 kb on + strand, within HP15_1574 at 1656.756 kb on + strand, within HP15_1574 at 1656.825 kb on + strand, within HP15_1574 at 1656.833 kb on - strand, within HP15_1574 at 1656.839 kb on + strand, within HP15_1574 at 1656.847 kb on - strand, within HP15_1574 at 1656.852 kb on - strand, within HP15_1574 at 1657.176 kb on + strand, within HP15_1574 at 1657.214 kb on + strand, within HP15_1574 at 1657.336 kb on + strand, within HP15_1574 at 1657.354 kb on + strand, within HP15_1574 at 1657.448 kb on - strand, within HP15_1574 at 1657.550 kb on + strand, within HP15_1574 at 1657.568 kb on - strand, within HP15_1574 at 1657.577 kb on + strand, within HP15_1574 at 1657.674 kb on - strand, within HP15_1574 at 1657.747 kb on - strand, within HP15_1574 at 1657.762 kb on + strand, within HP15_1574 at 1657.998 kb on - strand, within HP15_1574 at 1658.203 kb on + strand, within HP15_1574 at 1658.474 kb on - strand, within HP15_1574 at 1658.479 kb on + strand, within HP15_1574 at 1658.479 kb on + strand, within HP15_1574 at 1658.545 kb on - strand at 1658.545 kb on - strand at 1658.554 kb on + strand at 1658.760 kb on - strand at 1658.813 kb on - strand at 1658.962 kb on + strand at 1658.981 kb on - strand at 1659.024 kb on + strand at 1659.032 kb on - strand at 1659.128 kb on + strand, within HP15_1575 at 1659.137 kb on - strand, within HP15_1575 at 1659.239 kb on + strand, within HP15_1575 at 1659.336 kb on - strand, within HP15_1575 at 1659.358 kb on + strand, within HP15_1575 at 1659.358 kb on + strand, within HP15_1575 at 1659.388 kb on + strand, within HP15_1575 at 1659.434 kb on + strand, within HP15_1575 at 1659.434 kb on + strand, within HP15_1575 at 1659.436 kb on - strand, within HP15_1575 at 1659.442 kb on - strand, within HP15_1575 at 1659.446 kb on + strand, within HP15_1575 at 1659.446 kb on + strand, within HP15_1575 at 1659.525 kb on + strand, within HP15_1575 at 1659.549 kb on + strand, within HP15_1575 at 1659.549 kb on + strand, within HP15_1575 at 1659.557 kb on - strand, within HP15_1575 at 1659.557 kb on - strand, within HP15_1575 at 1659.659 kb on - strand, within HP15_1575 at 1659.665 kb on - strand, within HP15_1575 at 1659.737 kb on + strand, within HP15_1575 at 1659.768 kb on - strand, within HP15_1575 at 1659.768 kb on - strand, within HP15_1575
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 1,654,947 + HP15_1573 0.44 -0.1 1,654,987 - HP15_1573 0.46 +0.3 1,654,998 - HP15_1573 0.47 -2.6 1,655,055 + HP15_1573 0.50 -0.7 1,655,292 - HP15_1573 0.64 +0.2 1,655,455 + HP15_1573 0.73 +1.0 1,655,455 + HP15_1573 0.73 +0.2 1,655,455 + HP15_1573 0.73 +1.1 1,655,463 - HP15_1573 0.74 +0.2 1,655,463 - HP15_1573 0.74 -2.1 1,655,492 + HP15_1573 0.75 +1.4 1,655,499 + HP15_1573 0.76 -0.3 1,655,603 - HP15_1573 0.82 -2.6 1,655,634 - HP15_1573 0.84 +0.0 1,655,708 + HP15_1573 0.88 +0.3 1,655,716 - HP15_1573 0.88 -0.3 1,655,880 + +0.0 1,655,898 - -1.1 1,655,918 - +0.7 1,656,011 + +1.0 1,656,364 - HP15_1574 0.15 -0.6 1,656,484 - HP15_1574 0.19 -0.4 1,656,500 + HP15_1574 0.20 -0.4 1,656,538 - HP15_1574 0.21 +0.2 1,656,538 - HP15_1574 0.21 -0.3 1,656,587 - HP15_1574 0.23 +0.5 1,656,673 - HP15_1574 0.26 -0.5 1,656,725 + HP15_1574 0.28 -1.3 1,656,756 + HP15_1574 0.29 +0.5 1,656,825 + HP15_1574 0.31 +0.6 1,656,833 - HP15_1574 0.31 -0.1 1,656,839 + HP15_1574 0.32 +0.0 1,656,847 - HP15_1574 0.32 -0.0 1,656,852 - HP15_1574 0.32 -0.5 1,657,176 + HP15_1574 0.43 -0.3 1,657,214 + HP15_1574 0.45 -0.5 1,657,336 + HP15_1574 0.49 +1.1 1,657,354 + HP15_1574 0.49 -0.3 1,657,448 - HP15_1574 0.53 -0.9 1,657,550 + HP15_1574 0.56 -1.0 1,657,568 - HP15_1574 0.57 +1.0 1,657,577 + HP15_1574 0.57 -1.4 1,657,674 - HP15_1574 0.60 +0.0 1,657,747 - HP15_1574 0.63 -0.8 1,657,762 + HP15_1574 0.63 -2.3 1,657,998 - HP15_1574 0.72 -0.6 1,658,203 + HP15_1574 0.79 -0.3 1,658,474 - HP15_1574 0.88 -0.2 1,658,479 + HP15_1574 0.88 -0.3 1,658,479 + HP15_1574 0.88 -0.1 1,658,545 - -0.4 1,658,545 - -0.2 1,658,554 + +0.4 1,658,760 - -0.1 1,658,813 - -0.9 1,658,962 + -0.6 1,658,981 - +0.5 1,659,024 + -0.2 1,659,032 - -0.6 1,659,128 + HP15_1575 0.16 +0.8 1,659,137 - HP15_1575 0.16 +0.5 1,659,239 + HP15_1575 0.25 -0.1 1,659,336 - HP15_1575 0.34 -0.4 1,659,358 + HP15_1575 0.36 +0.2 1,659,358 + HP15_1575 0.36 +0.3 1,659,388 + HP15_1575 0.39 -0.1 1,659,434 + HP15_1575 0.43 -1.5 1,659,434 + HP15_1575 0.43 -0.5 1,659,436 - HP15_1575 0.43 -0.6 1,659,442 - HP15_1575 0.43 -0.6 1,659,446 + HP15_1575 0.44 +0.6 1,659,446 + HP15_1575 0.44 -0.5 1,659,525 + HP15_1575 0.51 -0.7 1,659,549 + HP15_1575 0.53 -0.6 1,659,549 + HP15_1575 0.53 -0.3 1,659,557 - HP15_1575 0.54 -0.3 1,659,557 - HP15_1575 0.54 -0.7 1,659,659 - HP15_1575 0.63 +0.1 1,659,665 - HP15_1575 0.63 -0.3 1,659,737 + HP15_1575 0.70 +0.1 1,659,768 - HP15_1575 0.73 +0.4 1,659,768 - HP15_1575 0.73 +0.0
Or see this region's nucleotide sequence