Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1388 and HP15_1389 overlap by 1 nucleotides HP15_1389 and HP15_1390 are separated by 164 nucleotides
HP15_1388: HP15_1388 - iron-containing alcohol dehydrogenase, at 1,464,161 to 1,465,348
_1388
HP15_1389: HP15_1389 - conserved hypothetical protein, at 1,465,348 to 1,465,902
_1389
HP15_1390: HP15_1390 - peptidase M48, Ste24p, at 1,466,067 to 1,467,344
_1390
Position (kb)
1465
1466 Strain fitness (log2 ratio)
-1
0
1 at 1464.403 kb on + strand, within HP15_1388 at 1464.485 kb on + strand, within HP15_1388 at 1464.599 kb on + strand, within HP15_1388 at 1464.639 kb on - strand, within HP15_1388 at 1464.731 kb on + strand, within HP15_1388 at 1464.763 kb on - strand, within HP15_1388 at 1464.799 kb on - strand, within HP15_1388 at 1464.901 kb on + strand, within HP15_1388 at 1464.909 kb on - strand, within HP15_1388 at 1464.962 kb on - strand, within HP15_1388 at 1464.972 kb on - strand, within HP15_1388 at 1465.030 kb on - strand, within HP15_1388 at 1465.257 kb on + strand at 1465.282 kb on + strand at 1465.290 kb on - strand at 1465.454 kb on - strand, within HP15_1389 at 1465.506 kb on - strand, within HP15_1389 at 1465.689 kb on - strand, within HP15_1389 at 1465.707 kb on + strand, within HP15_1389 at 1465.715 kb on - strand, within HP15_1389 at 1465.748 kb on + strand, within HP15_1389 at 1465.804 kb on - strand, within HP15_1389 at 1466.022 kb on + strand at 1466.032 kb on - strand at 1466.139 kb on - strand at 1466.171 kb on + strand at 1466.235 kb on + strand, within HP15_1390 at 1466.278 kb on - strand, within HP15_1390 at 1466.458 kb on + strand, within HP15_1390 at 1466.537 kb on - strand, within HP15_1390 at 1466.589 kb on + strand, within HP15_1390 at 1466.638 kb on + strand, within HP15_1390 at 1466.638 kb on + strand, within HP15_1390 at 1466.724 kb on + strand, within HP15_1390 at 1466.830 kb on + strand, within HP15_1390 at 1466.895 kb on + strand, within HP15_1390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 1,464,403 + HP15_1388 0.20 -0.4 1,464,485 + HP15_1388 0.27 -0.7 1,464,599 + HP15_1388 0.37 -0.2 1,464,639 - HP15_1388 0.40 +0.9 1,464,731 + HP15_1388 0.48 +0.3 1,464,763 - HP15_1388 0.51 -0.2 1,464,799 - HP15_1388 0.54 -0.4 1,464,901 + HP15_1388 0.62 +1.0 1,464,909 - HP15_1388 0.63 +0.1 1,464,962 - HP15_1388 0.67 +0.8 1,464,972 - HP15_1388 0.68 +0.3 1,465,030 - HP15_1388 0.73 +1.2 1,465,257 + +0.9 1,465,282 + +0.0 1,465,290 - +0.2 1,465,454 - HP15_1389 0.19 +0.7 1,465,506 - HP15_1389 0.28 -0.6 1,465,689 - HP15_1389 0.61 -0.3 1,465,707 + HP15_1389 0.65 +0.2 1,465,715 - HP15_1389 0.66 -0.9 1,465,748 + HP15_1389 0.72 +0.4 1,465,804 - HP15_1389 0.82 -0.9 1,466,022 + +0.2 1,466,032 - -0.3 1,466,139 - -1.6 1,466,171 + +0.0 1,466,235 + HP15_1390 0.13 +0.0 1,466,278 - HP15_1390 0.17 -0.9 1,466,458 + HP15_1390 0.31 +0.1 1,466,537 - HP15_1390 0.37 +1.7 1,466,589 + HP15_1390 0.41 -0.5 1,466,638 + HP15_1390 0.45 -1.2 1,466,638 + HP15_1390 0.45 -0.2 1,466,724 + HP15_1390 0.51 -0.1 1,466,830 + HP15_1390 0.60 -0.5 1,466,895 + HP15_1390 0.65 -1.5
Or see this region's nucleotide sequence