Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14290

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14280 and PGA1_c14290 are separated by 5 nucleotidesPGA1_c14290 and PGA1_c14300 are separated by 124 nucleotidesPGA1_c14300 and PGA1_c14310 are separated by 5 nucleotides PGA1_c14280: PGA1_c14280 - outer membrane protein Omp, at 1,482,199 to 1,484,595 _c14280 PGA1_c14290: PGA1_c14290 - putative outer membrane protein, at 1,484,601 to 1,485,251 _c14290 PGA1_c14300: PGA1_c14300 - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase FabZ, at 1,485,376 to 1,485,840 _c14300 PGA1_c14310: PGA1_c14310 - acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase LpxA, at 1,485,846 to 1,486,631 _c14310 Position (kb) 1484 1485 1486Strain fitness (log2 ratio) -2 -1 0 1at 1485.230 kb on + strandat 1485.238 kb on - strandat 1485.285 kb on + strandat 1485.293 kb on - strandat 1485.295 kb on + strandat 1485.313 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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1,485,230 + -1.9
1,485,238 - -1.4
1,485,285 + -0.4
1,485,293 - -0.2
1,485,295 + -0.3
1,485,313 - -0.3

Or see this region's nucleotide sequence