Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1231 and HP15_1232 are separated by 308 nucleotides HP15_1232 and HP15_1233 are separated by 29 nucleotides
HP15_1231: HP15_1231 - periplasmic tail-specific proteinase, at 1,279,276 to 1,281,399
_1231
HP15_1232: HP15_1232 - fatty acid oxidation complex subunit alpha, at 1,281,708 to 1,283,858
_1232
HP15_1233: HP15_1233 - acetyl-CoA acetyltransferase, at 1,283,888 to 1,285,096
_1233
Position (kb)
1281
1282
1283
1284 Strain fitness (log2 ratio)
-1
0
1 at 1281.556 kb on + strand at 1281.569 kb on - strand at 1281.694 kb on + strand at 1281.699 kb on - strand at 1281.701 kb on + strand at 1281.748 kb on + strand at 1281.773 kb on - strand at 1281.780 kb on - strand at 1281.860 kb on + strand at 1281.907 kb on - strand at 1281.907 kb on - strand at 1281.931 kb on - strand, within HP15_1232 at 1282.036 kb on + strand, within HP15_1232 at 1282.090 kb on + strand, within HP15_1232 at 1282.090 kb on + strand, within HP15_1232 at 1282.098 kb on - strand, within HP15_1232 at 1282.193 kb on + strand, within HP15_1232 at 1282.372 kb on - strand, within HP15_1232 at 1282.433 kb on + strand, within HP15_1232 at 1282.558 kb on - strand, within HP15_1232 at 1282.635 kb on + strand, within HP15_1232 at 1282.645 kb on - strand, within HP15_1232 at 1282.670 kb on + strand, within HP15_1232 at 1282.670 kb on + strand, within HP15_1232 at 1282.678 kb on - strand, within HP15_1232 at 1282.678 kb on - strand, within HP15_1232 at 1282.713 kb on - strand, within HP15_1232 at 1282.756 kb on + strand, within HP15_1232 at 1282.756 kb on + strand, within HP15_1232 at 1282.866 kb on + strand, within HP15_1232 at 1282.881 kb on + strand, within HP15_1232 at 1283.187 kb on - strand, within HP15_1232 at 1283.204 kb on + strand, within HP15_1232 at 1283.205 kb on + strand, within HP15_1232 at 1283.213 kb on - strand, within HP15_1232 at 1283.267 kb on - strand, within HP15_1232 at 1283.325 kb on - strand, within HP15_1232 at 1283.397 kb on - strand, within HP15_1232 at 1283.458 kb on - strand, within HP15_1232 at 1283.646 kb on - strand at 1283.743 kb on + strand at 1283.822 kb on - strand at 1283.825 kb on + strand at 1283.825 kb on + strand at 1283.846 kb on + strand at 1283.886 kb on + strand at 1283.894 kb on - strand at 1283.894 kb on - strand at 1284.034 kb on + strand, within HP15_1233 at 1284.034 kb on - strand, within HP15_1233 at 1284.121 kb on - strand, within HP15_1233 at 1284.122 kb on - strand, within HP15_1233 at 1284.214 kb on + strand, within HP15_1233 at 1284.215 kb on - strand, within HP15_1233 at 1284.222 kb on - strand, within HP15_1233 at 1284.222 kb on - strand, within HP15_1233 at 1284.224 kb on + strand, within HP15_1233 at 1284.263 kb on + strand, within HP15_1233 at 1284.270 kb on + strand, within HP15_1233 at 1284.278 kb on - strand, within HP15_1233 at 1284.278 kb on - strand, within HP15_1233 at 1284.330 kb on - strand, within HP15_1233 at 1284.438 kb on - strand, within HP15_1233 at 1284.468 kb on + strand, within HP15_1233 at 1284.508 kb on + strand, within HP15_1233 at 1284.522 kb on + strand, within HP15_1233 at 1284.616 kb on + strand, within HP15_1233 at 1284.616 kb on - strand, within HP15_1233 at 1284.634 kb on + strand, within HP15_1233 at 1284.637 kb on - strand, within HP15_1233 at 1284.642 kb on - strand, within HP15_1233 at 1284.655 kb on - strand, within HP15_1233 at 1284.736 kb on + strand, within HP15_1233 at 1284.744 kb on - strand, within HP15_1233 at 1284.830 kb on + strand, within HP15_1233 at 1284.843 kb on - strand, within HP15_1233
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 1,281,556 + -1.3 1,281,569 - -0.8 1,281,694 + -0.2 1,281,699 - -0.1 1,281,701 + +0.9 1,281,748 + +0.4 1,281,773 - +0.5 1,281,780 - -0.2 1,281,860 + -0.1 1,281,907 - +0.1 1,281,907 - -0.4 1,281,931 - HP15_1232 0.10 +0.1 1,282,036 + HP15_1232 0.15 +0.3 1,282,090 + HP15_1232 0.18 +0.8 1,282,090 + HP15_1232 0.18 -0.1 1,282,098 - HP15_1232 0.18 -0.2 1,282,193 + HP15_1232 0.23 -0.1 1,282,372 - HP15_1232 0.31 -0.3 1,282,433 + HP15_1232 0.34 -1.1 1,282,558 - HP15_1232 0.40 -1.0 1,282,635 + HP15_1232 0.43 -0.3 1,282,645 - HP15_1232 0.44 -0.2 1,282,670 + HP15_1232 0.45 -0.4 1,282,670 + HP15_1232 0.45 -0.5 1,282,678 - HP15_1232 0.45 -0.0 1,282,678 - HP15_1232 0.45 -0.9 1,282,713 - HP15_1232 0.47 +0.2 1,282,756 + HP15_1232 0.49 -0.2 1,282,756 + HP15_1232 0.49 +0.1 1,282,866 + HP15_1232 0.54 -0.1 1,282,881 + HP15_1232 0.55 -0.6 1,283,187 - HP15_1232 0.69 +0.0 1,283,204 + HP15_1232 0.70 -0.8 1,283,205 + HP15_1232 0.70 +0.9 1,283,213 - HP15_1232 0.70 -0.8 1,283,267 - HP15_1232 0.72 -0.2 1,283,325 - HP15_1232 0.75 -0.3 1,283,397 - HP15_1232 0.79 -0.7 1,283,458 - HP15_1232 0.81 +0.1 1,283,646 - -0.2 1,283,743 + -0.9 1,283,822 - +0.1 1,283,825 + -0.0 1,283,825 + -1.3 1,283,846 + +0.0 1,283,886 + -0.9 1,283,894 - +0.3 1,283,894 - +0.2 1,284,034 + HP15_1233 0.12 -0.4 1,284,034 - HP15_1233 0.12 +0.3 1,284,121 - HP15_1233 0.19 +1.3 1,284,122 - HP15_1233 0.19 -0.0 1,284,214 + HP15_1233 0.27 +0.6 1,284,215 - HP15_1233 0.27 +0.8 1,284,222 - HP15_1233 0.28 +0.1 1,284,222 - HP15_1233 0.28 -0.2 1,284,224 + HP15_1233 0.28 -0.7 1,284,263 + HP15_1233 0.31 -0.3 1,284,270 + HP15_1233 0.32 +0.8 1,284,278 - HP15_1233 0.32 -0.1 1,284,278 - HP15_1233 0.32 +0.6 1,284,330 - HP15_1233 0.37 -0.2 1,284,438 - HP15_1233 0.45 -1.3 1,284,468 + HP15_1233 0.48 -0.2 1,284,508 + HP15_1233 0.51 -0.4 1,284,522 + HP15_1233 0.52 +0.8 1,284,616 + HP15_1233 0.60 +0.3 1,284,616 - HP15_1233 0.60 +0.5 1,284,634 + HP15_1233 0.62 +0.9 1,284,637 - HP15_1233 0.62 +0.3 1,284,642 - HP15_1233 0.62 +1.4 1,284,655 - HP15_1233 0.63 -0.0 1,284,736 + HP15_1233 0.70 +0.3 1,284,744 - HP15_1233 0.71 -0.1 1,284,830 + HP15_1233 0.78 -0.4 1,284,843 - HP15_1233 0.79 -0.4
Or see this region's nucleotide sequence