Strain Fitness in Marinobacter adhaerens HP15 around HP15_1143

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1141 and HP15_1142 are separated by 51 nucleotidesHP15_1142 and HP15_1143 are separated by 24 nucleotidesHP15_1143 and HP15_1144 are separated by 79 nucleotides HP15_1141: HP15_1141 - enoyl-CoA hydratase/isomerase, at 1,175,030 to 1,175,803 _1141 HP15_1142: HP15_1142 - hypothetical protein, at 1,175,855 to 1,175,962 _1142 HP15_1143: HP15_1143 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit, at 1,175,987 to 1,177,501 _1143 HP15_1144: HP15_1144 - protein belonging to uncharacterized protein family UPF0061, at 1,177,581 to 1,179,035 _1144 Position (kb) 1175 1176 1177 1178Strain fitness (log2 ratio) -2 -1 0 1at 1175.120 kb on + strand, within HP15_1141at 1175.248 kb on - strand, within HP15_1141at 1175.265 kb on - strand, within HP15_1141at 1175.287 kb on - strand, within HP15_1141at 1175.304 kb on - strand, within HP15_1141at 1175.319 kb on + strand, within HP15_1141at 1175.333 kb on - strand, within HP15_1141at 1175.555 kb on + strand, within HP15_1141at 1175.622 kb on + strand, within HP15_1141at 1175.663 kb on - strand, within HP15_1141at 1175.711 kb on - strand, within HP15_1141at 1175.788 kb on + strandat 1177.668 kb on - strandat 1177.897 kb on + strand, within HP15_1144at 1177.900 kb on - strand, within HP15_1144at 1177.906 kb on - strand, within HP15_1144at 1177.996 kb on - strand, within HP15_1144at 1178.002 kb on - strand, within HP15_1144at 1178.110 kb on + strand, within HP15_1144at 1178.110 kb on + strand, within HP15_1144at 1178.115 kb on + strand, within HP15_1144at 1178.123 kb on - strand, within HP15_1144at 1178.289 kb on + strand, within HP15_1144at 1178.400 kb on + strand, within HP15_1144at 1178.410 kb on + strand, within HP15_1144at 1178.413 kb on - strand, within HP15_1144at 1178.413 kb on - strand, within HP15_1144at 1178.413 kb on - strand, within HP15_1144

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
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1,175,120 + HP15_1141 0.12 +0.4
1,175,248 - HP15_1141 0.28 -0.8
1,175,265 - HP15_1141 0.30 -0.4
1,175,287 - HP15_1141 0.33 +0.7
1,175,304 - HP15_1141 0.35 +0.0
1,175,319 + HP15_1141 0.37 +0.6
1,175,333 - HP15_1141 0.39 +1.1
1,175,555 + HP15_1141 0.68 +0.2
1,175,622 + HP15_1141 0.76 +0.4
1,175,663 - HP15_1141 0.82 -0.4
1,175,711 - HP15_1141 0.88 +0.3
1,175,788 + +0.0
1,177,668 - +0.3
1,177,897 + HP15_1144 0.22 +0.3
1,177,900 - HP15_1144 0.22 -0.1
1,177,906 - HP15_1144 0.22 +0.5
1,177,996 - HP15_1144 0.29 +0.3
1,178,002 - HP15_1144 0.29 -2.3
1,178,110 + HP15_1144 0.36 -0.7
1,178,110 + HP15_1144 0.36 -0.1
1,178,115 + HP15_1144 0.37 +0.5
1,178,123 - HP15_1144 0.37 +0.1
1,178,289 + HP15_1144 0.49 -0.9
1,178,400 + HP15_1144 0.56 +0.6
1,178,410 + HP15_1144 0.57 -0.7
1,178,413 - HP15_1144 0.57 +0.1
1,178,413 - HP15_1144 0.57 +0.2
1,178,413 - HP15_1144 0.57 +0.3

Or see this region's nucleotide sequence