Experiment: nitrite 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17355 and BWI76_RS17360 are separated by 102 nucleotides BWI76_RS17360 and BWI76_RS17365 overlap by 1 nucleotides
BWI76_RS17355: BWI76_RS17355 - YchO family inverse autotransporter domain-containing protein, at 3,596,584 to 3,597,963
_RS17355
BWI76_RS17360: BWI76_RS17360 - nitrate reductase, at 3,598,066 to 3,600,666
_RS17360
BWI76_RS17365: BWI76_RS17365 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 3,600,666 to 3,604,736
_RS17365
Position (kb)
3598
3599
3600
3601 Strain fitness (log2 ratio)
-1
0
1 at 3597.338 kb on - strand, within BWI76_RS17355 at 3597.382 kb on - strand, within BWI76_RS17355 at 3597.444 kb on - strand, within BWI76_RS17355 at 3597.522 kb on + strand, within BWI76_RS17355 at 3597.537 kb on + strand, within BWI76_RS17355 at 3597.545 kb on - strand, within BWI76_RS17355 at 3597.858 kb on - strand at 3597.879 kb on - strand at 3598.128 kb on - strand at 3598.212 kb on + strand at 3598.911 kb on + strand, within BWI76_RS17360 at 3599.059 kb on - strand, within BWI76_RS17360 at 3599.368 kb on - strand, within BWI76_RS17360 at 3599.576 kb on - strand, within BWI76_RS17360 at 3599.693 kb on + strand, within BWI76_RS17360 at 3599.826 kb on + strand, within BWI76_RS17360 at 3599.923 kb on + strand, within BWI76_RS17360 at 3600.207 kb on - strand, within BWI76_RS17360 at 3600.218 kb on - strand, within BWI76_RS17360 at 3601.110 kb on + strand, within BWI76_RS17365 at 3601.270 kb on + strand, within BWI76_RS17365 at 3601.567 kb on - strand, within BWI76_RS17365
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 40 mM remove 3,597,338 - BWI76_RS17355 0.55 -0.4 3,597,382 - BWI76_RS17355 0.58 -0.1 3,597,444 - BWI76_RS17355 0.62 -0.5 3,597,522 + BWI76_RS17355 0.68 +0.2 3,597,537 + BWI76_RS17355 0.69 -0.0 3,597,545 - BWI76_RS17355 0.70 +0.3 3,597,858 - -0.1 3,597,879 - -0.3 3,598,128 - -0.6 3,598,212 + +0.2 3,598,911 + BWI76_RS17360 0.32 +0.3 3,599,059 - BWI76_RS17360 0.38 +0.0 3,599,368 - BWI76_RS17360 0.50 -0.0 3,599,576 - BWI76_RS17360 0.58 +0.4 3,599,693 + BWI76_RS17360 0.63 -0.6 3,599,826 + BWI76_RS17360 0.68 +0.3 3,599,923 + BWI76_RS17360 0.71 -0.1 3,600,207 - BWI76_RS17360 0.82 -0.3 3,600,218 - BWI76_RS17360 0.83 +0.3 3,601,110 + BWI76_RS17365 0.11 -0.1 3,601,270 + BWI76_RS17365 0.15 -0.8 3,601,567 - BWI76_RS17365 0.22 -0.1
Or see this region's nucleotide sequence