Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3177 and DvMF_3178 are separated by 103 nucleotides DvMF_3178 and DvMF_3179 are separated by 293 nucleotides DvMF_3179 and DvMF_3180 are separated by 168 nucleotides
DvMF_3177: DvMF_3177 - protein of unknown function UPF0029 (RefSeq), at 4,008,335 to 4,009,159
_3177
DvMF_3178: DvMF_3178 - 6-phosphogluconolactonase (RefSeq), at 4,009,263 to 4,010,000
_3178
DvMF_3179: DvMF_3179 - OsmC family protein (RefSeq), at 4,010,294 to 4,010,773
_3179
DvMF_3180: DvMF_3180 - beta-lactamase domain protein (RefSeq), at 4,010,942 to 4,011,688
_3180
Position (kb)
4009
4010
4011 Strain fitness (log2 ratio)
-1
0
1
2 at 4008.278 kb on + strand at 4008.440 kb on + strand, within DvMF_3177 at 4009.129 kb on + strand at 4009.229 kb on + strand at 4009.298 kb on + strand at 4009.751 kb on + strand, within DvMF_3178 at 4009.766 kb on + strand, within DvMF_3178 at 4009.769 kb on - strand, within DvMF_3178 at 4009.824 kb on + strand, within DvMF_3178 at 4009.868 kb on + strand, within DvMF_3178 at 4010.056 kb on + strand at 4010.168 kb on + strand at 4010.338 kb on - strand at 4010.413 kb on + strand, within DvMF_3179 at 4010.550 kb on + strand, within DvMF_3179 at 4010.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,008,278 + +0.0 4,008,440 + DvMF_3177 0.13 -0.2 4,009,129 + -0.1 4,009,229 + +1.5 4,009,298 + +0.3 4,009,751 + DvMF_3178 0.66 +0.7 4,009,766 + DvMF_3178 0.68 -0.2 4,009,769 - DvMF_3178 0.69 +1.4 4,009,824 + DvMF_3178 0.76 +0.5 4,009,868 + DvMF_3178 0.82 +0.4 4,010,056 + +0.1 4,010,168 + -0.4 4,010,338 - -0.3 4,010,413 + DvMF_3179 0.25 +0.6 4,010,550 + DvMF_3179 0.53 -0.4 4,010,911 - +2.2
Or see this region's nucleotide sequence