Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2961 and DvMF_2962 are separated by 99 nucleotides DvMF_2962 and DvMF_2963 are separated by 85 nucleotides DvMF_2963 and DvMF_2964 are separated by 329 nucleotides DvMF_2964 and DvMF_2965 are separated by 203 nucleotides
DvMF_2961: DvMF_2961 - hypothetical protein (RefSeq), at 3,734,657 to 3,735,172
_2961
DvMF_2962: DvMF_2962 - stationary-phase survival protein SurE (RefSeq), at 3,735,272 to 3,736,075
_2962
DvMF_2963: DvMF_2963 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,736,161 to 3,739,916
_2963
DvMF_2964: DvMF_2964 - RNP-1 like RNA-binding protein (RefSeq), at 3,740,246 to 3,740,512
_2964
DvMF_2965: DvMF_2965 - 17 kDa surface antigen (RefSeq), at 3,740,716 to 3,741,174
_2965
Position (kb)
3736
3737
3738
3739
3740 Strain fitness (log2 ratio)
-2
-1
0
1 at 3735.627 kb on + strand, within DvMF_2962 at 3735.723 kb on + strand, within DvMF_2962 at 3735.788 kb on - strand, within DvMF_2962 at 3735.949 kb on - strand, within DvMF_2962 at 3736.121 kb on + strand at 3736.754 kb on + strand, within DvMF_2963 at 3736.783 kb on + strand, within DvMF_2963 at 3737.026 kb on + strand, within DvMF_2963 at 3737.058 kb on - strand, within DvMF_2963 at 3737.097 kb on - strand, within DvMF_2963 at 3737.216 kb on - strand, within DvMF_2963 at 3737.216 kb on - strand, within DvMF_2963 at 3737.723 kb on - strand, within DvMF_2963 at 3737.861 kb on + strand, within DvMF_2963 at 3737.927 kb on - strand, within DvMF_2963 at 3737.952 kb on + strand, within DvMF_2963 at 3737.952 kb on + strand, within DvMF_2963 at 3738.019 kb on - strand, within DvMF_2963 at 3738.097 kb on + strand, within DvMF_2963 at 3738.357 kb on + strand, within DvMF_2963 at 3738.392 kb on + strand, within DvMF_2963 at 3738.579 kb on - strand, within DvMF_2963 at 3738.579 kb on - strand, within DvMF_2963 at 3738.581 kb on - strand, within DvMF_2963 at 3738.729 kb on + strand, within DvMF_2963 at 3739.081 kb on - strand, within DvMF_2963 at 3739.086 kb on + strand, within DvMF_2963 at 3739.145 kb on + strand, within DvMF_2963 at 3739.454 kb on - strand, within DvMF_2963 at 3739.794 kb on - strand at 3739.794 kb on - strand at 3740.114 kb on + strand at 3740.189 kb on - strand at 3740.283 kb on - strand, within DvMF_2964 at 3740.378 kb on + strand, within DvMF_2964 at 3740.398 kb on + strand, within DvMF_2964 at 3740.482 kb on + strand, within DvMF_2964 at 3740.764 kb on - strand, within DvMF_2965 at 3740.846 kb on + strand, within DvMF_2965
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,735,627 + DvMF_2962 0.44 -0.4 3,735,723 + DvMF_2962 0.56 +0.1 3,735,788 - DvMF_2962 0.64 -0.2 3,735,949 - DvMF_2962 0.84 -0.1 3,736,121 + -1.1 3,736,754 + DvMF_2963 0.16 -0.5 3,736,783 + DvMF_2963 0.17 -0.2 3,737,026 + DvMF_2963 0.23 -0.7 3,737,058 - DvMF_2963 0.24 -0.2 3,737,097 - DvMF_2963 0.25 -0.1 3,737,216 - DvMF_2963 0.28 -0.1 3,737,216 - DvMF_2963 0.28 -0.6 3,737,723 - DvMF_2963 0.42 -1.1 3,737,861 + DvMF_2963 0.45 -0.5 3,737,927 - DvMF_2963 0.47 -0.6 3,737,952 + DvMF_2963 0.48 -1.9 3,737,952 + DvMF_2963 0.48 -0.1 3,738,019 - DvMF_2963 0.49 -0.7 3,738,097 + DvMF_2963 0.52 -0.4 3,738,357 + DvMF_2963 0.58 -0.5 3,738,392 + DvMF_2963 0.59 -0.6 3,738,579 - DvMF_2963 0.64 -0.1 3,738,579 - DvMF_2963 0.64 -0.4 3,738,581 - DvMF_2963 0.64 -0.3 3,738,729 + DvMF_2963 0.68 +0.1 3,739,081 - DvMF_2963 0.78 -0.4 3,739,086 + DvMF_2963 0.78 -0.6 3,739,145 + DvMF_2963 0.79 -0.3 3,739,454 - DvMF_2963 0.88 -0.3 3,739,794 - +1.0 3,739,794 - -0.5 3,740,114 + -0.3 3,740,189 - -1.0 3,740,283 - DvMF_2964 0.14 -0.2 3,740,378 + DvMF_2964 0.49 -0.6 3,740,398 + DvMF_2964 0.57 -0.4 3,740,482 + DvMF_2964 0.88 -0.6 3,740,764 - DvMF_2965 0.10 -1.6 3,740,846 + DvMF_2965 0.28 -0.6
Or see this region's nucleotide sequence