Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2817 and DvMF_2818 are separated by 8 nucleotides DvMF_2818 and DvMF_2819 are separated by 326 nucleotides DvMF_2819 and DvMF_2820 are separated by 81 nucleotides
DvMF_2817: DvMF_2817 - hypothetical protein (RefSeq), at 3,563,002 to 3,563,328
_2817
DvMF_2818: DvMF_2818 - methylated-DNA/protein-cysteine methyltransferase (RefSeq), at 3,563,337 to 3,563,981
_2818
DvMF_2819: DvMF_2819 - conserved hypothetical radical SAM protein (RefSeq), at 3,564,308 to 3,565,426
_2819
DvMF_2820: DvMF_2820 - rod shape-determining protein MreB (RefSeq), at 3,565,508 to 3,566,548
_2820
Position (kb)
3564
3565
3566 Strain fitness (log2 ratio)
-1
0
1 at 3563.323 kb on - strand at 3563.330 kb on + strand at 3563.338 kb on - strand at 3563.501 kb on + strand, within DvMF_2818 at 3563.806 kb on - strand, within DvMF_2818 at 3563.852 kb on - strand, within DvMF_2818 at 3564.249 kb on - strand at 3564.267 kb on + strand at 3564.267 kb on + strand at 3564.275 kb on - strand at 3564.275 kb on - strand at 3564.296 kb on - strand at 3564.348 kb on + strand at 3564.383 kb on + strand at 3564.386 kb on - strand at 3564.484 kb on - strand, within DvMF_2819 at 3564.553 kb on - strand, within DvMF_2819 at 3564.553 kb on - strand, within DvMF_2819 at 3564.707 kb on + strand, within DvMF_2819 at 3564.789 kb on - strand, within DvMF_2819 at 3564.805 kb on + strand, within DvMF_2819 at 3564.853 kb on - strand, within DvMF_2819 at 3564.869 kb on - strand, within DvMF_2819 at 3565.069 kb on - strand, within DvMF_2819 at 3565.177 kb on + strand, within DvMF_2819 at 3565.212 kb on - strand, within DvMF_2819
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,563,323 - -0.3 3,563,330 + +0.5 3,563,338 - -0.6 3,563,501 + DvMF_2818 0.25 -0.9 3,563,806 - DvMF_2818 0.73 -0.5 3,563,852 - DvMF_2818 0.80 -0.4 3,564,249 - -0.0 3,564,267 + -0.1 3,564,267 + +0.2 3,564,275 - +0.1 3,564,275 - -0.2 3,564,296 - +0.3 3,564,348 + +0.3 3,564,383 + -0.0 3,564,386 - -0.1 3,564,484 - DvMF_2819 0.16 -0.0 3,564,553 - DvMF_2819 0.22 +0.1 3,564,553 - DvMF_2819 0.22 -0.0 3,564,707 + DvMF_2819 0.36 -0.1 3,564,789 - DvMF_2819 0.43 -0.3 3,564,805 + DvMF_2819 0.44 -0.5 3,564,853 - DvMF_2819 0.49 +0.3 3,564,869 - DvMF_2819 0.50 -0.4 3,565,069 - DvMF_2819 0.68 -0.3 3,565,177 + DvMF_2819 0.78 +0.3 3,565,212 - DvMF_2819 0.81 +0.1
Or see this region's nucleotide sequence